Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0491 ATGGGCCTAAATTCTAATGCCATTTGTGAGACTATTGGCCTAAAACATAAAAAGAATTTTATTACTCTGTTGGAAAAAAGAATATTCGAAGAAAACGGGTATAGTTTTGCAGTGTCTAACAATCAGCGTGGAATCGACTCTCATTCACATCTCAATCCTATGTCTCGTCAAGCCGTTACAAAATTGATCTCCTCCATCGCATCGCGCCGCCACAGCATCCGCCACTTCACGGCGGCGCCATCCTCTCCCGCGGTGTTCGTGGACAAGACCACTCGCGTGATCTGCCAAGGCATAACGGGAAAGAACGGCACCTTCCACACCGAACAAGCAATCGAATATGGAACCAACATGGTTGGTGGTGTGACTCCGAAGAAAGGTGGAACTGAACATTTAGGGCTTCCTGTATATAACAGTGTTGCTGAAGCTAAATCTGAAACTAAGGCAAATGCTTCTGTTATCTATGTTCCACCACCTTTTGCTGCTGCTGCTATTTTGGAGGCTTTGGAAGCTGAATTGGATCTTATTGTTTGCATCACTGAAGGAATTCCCCAGCATGATATGGTACGAGTTAAAGCTGCAATTAACAGCCAGTCCAAGACTCGTCTGATAGGACCAAACTGCCCTGGTATTATCAAGCCCGGGGAATGTAAAATTGGAATCATGCCCGGTTACATTCATAAACCTGGACGTATAGGAATCGTTTCCCGTTCTGGAACCTTGACATATGAAGCGGTTTTTCAAACGACTGCTGTTGGCCTCGGACAATCCACTTGTGTGGGTATAGGAGGAGATCCCTTTAATGGAACCAACTTTGTTGATTGTCTTGAGAAGTTCCTAGTTGATCCACAGACAGAAGGTATCATTCTCATAGGAGAGATAGGAGGAACTGCAGAAGAGGATGCTGCTCAACTAATTAAGGAAAGTGGGACTGAGAAGCCTGTTGTTGCATTCATTGCTGGATTAACTGCTCCACCTGGCCGTCGTATGGGTCATGCTGGAGCTATTGTATCGGGTGGCAAGGGTACTGCACAAGACAAGATCAAAACTCTCAGGGAAGCTGGGGTCACAGTTGTGGAGTCACCTGCTAAAATTGGAGCTGCCATGCTAGATGTTTTCAAGCAGAGGGGCTTGGTGGAATAG 1140 0.4596 MGLNSNAICETIGLKHKKNFITLLEKRIFEENGYSFAVSNNQRGIDSHSHLNPMSRQAVTKLISSIASRRHSIRHFTAAPSSPAVFVDKTTRVICQGITGKNGTFHTEQAIEYGTNMVGGVTPKKGGTEHLGLPVYNSVAEAKSETKANASVIYVPPPFAAAAILEALEAELDLIVCITEGIPQHDMVRVKAAINSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTEGIILIGEIGGTAEEDAAQLIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLDVFKQRGLVE* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0491 379 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 83 205 IPR036291 -
Lan10g0491 379 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 235 264 IPR033847 -
Lan10g0491 379 Gene3D - 204 377 IPR016102 -
Lan10g0491 379 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 320 333 IPR017440 -
Lan10g0491 379 Pfam CoA binding domain 88 181 IPR003781 -
Lan10g0491 379 Pfam CoA-ligase 234 355 IPR005811 GO:0003824
Lan10g0491 379 PANTHER SUCCINYL-COA LIGASE SUBUNIT ALPHA 59 378 - -
Lan10g0491 379 Gene3D - 84 203 - -
Lan10g0491 379 SUPERFAMILY Succinyl-CoA synthetase domains 206 374 IPR016102 -
Lan10g0491 379 TIGRFAM sucCoAalpha: succinate-CoA ligase, alpha subunit 86 371 IPR005810 GO:0003824
Lan10g0491 379 PRINTS Succinyl-CoA synthase signature 164 181 - -
Lan10g0491 379 PRINTS Succinyl-CoA synthase signature 260 278 - -
Lan10g0491 379 PRINTS Succinyl-CoA synthase signature 291 304 - -
Lan10g0491 379 PRINTS Succinyl-CoA synthase signature 324 341 - -
Lan10g0491 379 PANTHER SUCCINATE--COA LIGASE [ADP-FORMING] SUBUNIT ALPHA-1, MITOCHONDRIAL 59 378 - -
Lan10g0491 379 SMART CoA_binding_2 86 182 IPR003781 -
Lan10g0491 379 Hamap Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 83 372 IPR005810 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0491 Lan-Chr10 3806169 3810339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0491 172 379 Acyl Lipid Metabolism Gene Families AT3G06650 31.963 2.54e-22 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0491 K01899 - gmx:100815484 578.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0491 10 3806169 3810339 Lan10g0491 10 3806169 3810339 ECH
Lan10g0491 10 3806169 3810339 Lan3g0414 3 3554532 3558992 LSH