LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi2g05847	ATGAGTTTCCAACGCGCAACCAAACTGCTCTCATCCATCGCATCGCGCCGCCAACAACTCCGAAACCTATCCTCAACGCCGTCGTCACCAGCGGTGTTCGTCGATAAGAGCACGCGCGTGATCTGTCAAGGAATTACCGGAAAGAATGGAACGTTTCACACGGAGCAGGCAATCGAATACGGAACGAATATGGTTGGAGGTGTTACTCCGAAGAAAGGCGGAACCGAACATTTAGGGCTTCCGGTTTTCAATTCCGTTGCGGAAGCGAAAGCTGAGACTAAAGCTAATGCTTCTGTTATTTATGTTCCTCCTCCTTTTGCTGCTGCTGCGATTATGGAGGCGTTGGAGGCTGAGTTGGATCTTGTTGTTTGCATTACGGAAGGGATTCCTCAGCATGATATGGTACGGGTTAAAGCAGCAATTAACAGACAATCCAAAACTCGTTTGATTGGACCAAACTGCCCTGGTATCATCAAGCCTGGGGAATGTAAAATCGGAATCATGCCAGGTTACATCCACAAACCTGGGCGCATTGGAATTGTTTCTCGTTCTGGCACTTTGACTTATGAAGCGGTTTTCCAAACAACTGCTGTTGGCCTTGGACAATCCACTTGTGTGGGTATTGGAGGAGATCCCTTCAATGGAACAAACTTTGTTGATTGCCTTACAAAGTTCCTAGCGGATCCTCAGACAGAAGGTATCGTTCTCATAGGAGAGATAGGAGGAACTGCAGAAGAGGATGCTGCTGCACTGATTAAGGAAAGCGGGACTGAGAAGCCCATCGTTGCATTTATTGCTGGATTAACTGCTCCCCCTGGCCGTCGTATGGGTCATGCTGGAGCTATTGTGTCGGGTGGCAAGGGCACTGCTCAAGACAAGATCAGCACTCTTAGGGATGCTGGAGTCACAGTTGTGGAGTCTCCTGCTAAAATTGGAACTGCCATGTTTGAAATTTTCAAGCAGAAGGGGTTGGTGCAATAG	981	0.4832	MSFQRATKLLSSIASRRQQLRNLSSTPSSPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTNMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEALEAELDLVVCITEGIPQHDMVRVKAAINRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLTKFLADPQTEGIVLIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKISTLRDAGVTVVESPAKIGTAMFEIFKQKGLVQ	326

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi2g05847	326	ProSitePatterns	ATP-citrate lyase / succinyl-CoA ligases family active site.	267	280	IPR017440	-
	Vivi2g05847	326	ProSitePatterns	ATP-citrate lyase / succinyl-CoA ligases family signature 1.	182	211	IPR033847	-
	Vivi2g05847	326	FunFam	Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial	151	324	-	-
	Vivi2g05847	326	NCBIfam	succinate--CoA ligase subunit alpha	33	318	IPR005810	GO:0003824
	Vivi2g05847	326	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	30	152	IPR036291	-
	Vivi2g05847	326	PIRSF	SucCS_alpha	28	322	IPR005810	GO:0003824
	Vivi2g05847	326	Pfam	CoA-ligase	181	302	IPR005811	GO:0003824
	Vivi2g05847	326	Gene3D	-	151	324	IPR016102	-
	Vivi2g05847	326	Gene3D	-	31	150	-	-
	Vivi2g05847	326	Hamap	Succinate--CoA ligase [ADP-forming] subunit alpha [sucD].	30	319	IPR005810	GO:0003824
	Vivi2g05847	326	SMART	CoA_binding_2	33	129	IPR003781	-
	Vivi2g05847	326	PRINTS	Succinyl-CoA synthase signature	271	288	-	-
	Vivi2g05847	326	PRINTS	Succinyl-CoA synthase signature	207	225	-	-
	Vivi2g05847	326	PRINTS	Succinyl-CoA synthase signature	111	128	-	-
	Vivi2g05847	326	PRINTS	Succinyl-CoA synthase signature	238	251	-	-
	Vivi2g05847	326	FunFam	Succinate--CoA ligase [ADP-forming] subunit alpha	29	150	-	-
	Vivi2g05847	326	PANTHER	SUCCINYL-COA LIGASE SUBUNIT ALPHA	11	324	-	-
	Vivi2g05847	326	SUPERFAMILY	Succinyl-CoA synthetase domains	153	320	IPR016102	-
	Vivi2g05847	326	Pfam	CoA binding domain	35	128	IPR003781	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi2g05847	119	321	Acyl Lipid Metabolism Gene Families	AT3G06650	32.710	4.28e-23	98.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi2g05847	K01899		-	gmx:100815484	574.704

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vivi2g05847	2	188368786	188373383	Vivi2g05847	2	188368786	188373383	ECH