Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00381 ATGGAAATGGAAAAGTGGAAAGAGCATAACAACAATGGATATTACGATCAATTTTTGTGTGATTATGATAGAGAGGTACCAAGTAGAGAGCGTAGCCCTACGATTCCTTCTTCAGTTTCTTCATCTCCAACTAGACATGGCGCCATCGACCACCCTGTGTCGAAATTGGACACCTTGGCTGGCATCGCAATCAAGTATGGTGTTGAGGTGGCAGACATCAAAAAATTGAATGGCCTTGTTACAGACCATCAGATGTTTGCGCTTAAAACTCTACAAATTCCATTACCTGGAAGGCACCCTCCATCTCCTTGTTTATCAAATGGTTCCAGTACACCAGGACATGGTAACGCTGATCACAGTCCTCCTGACCATGCGCACCGTGAACTGTTTGAATCATTCCAGTCCCTGAGAGTGAAGCCTTCTGAGCGGAAGGTGTCCTCCGCCATGAGCTCATTGCAGGGTTACTATGGACTTAAAAATTCTGCAGAAAACGGTTCATTCTCCAGGAACTCACCTATGTCTGACCGACCTCTGAGTCGGCACCGGAAATCCAAAAGTTTGGTCAATGTCATCATGGAAGAGATTATGGAAAAGTCTGATGGTGCACCAGCTTCAGACACCCGGGAAGTTAACTCCAATAAATGGAATGAAAAACTTGTCCAGAGGCGTCAGAAATCTGAAGCTGACTTTACTAGGATACCAGAGATGCTTATGAGGGAGGATAATAGCAGCAGTGGTGGTCTTCCATCAAGAACAGGAAAGGGTTTAGCTCTGAGACAGAAAGCAGCTAGCAAAACTGCAGTGACAACTGATTCTGAATCAAGTGGTTTGAATCCTGTGCCAACAGGTATGGGGGATGCTTTTCTAACTTATGCTTCAACTGGGGTGAAGAAATCATCAAGTACATCTTGTTTACAAGATCAGGATAATAGCAATGGCTCCTCATCCATTTGGCCATCCTCAATGTGGAATTTGAAACCAGATTTACAGGCCCTTTCAACTGCAGCCATTGGAAAACCCTTGCCTAAGCCAATAACTGGTCGAAGAAATAAAGCTGCACTTGATTAA 1068 0.4438 MEMEKWKEHNNNGYYDQFLCDYDREVPSRERSPTIPSSVSSSPTRHGAIDHPVSKLDTLAGIAIKYGVEVADIKKLNGLVTDHQMFALKTLQIPLPGRHPPSPCLSNGSSTPGHGNADHSPPDHAHRELFESFQSLRVKPSERKVSSAMSSLQGYYGLKNSAENGSFSRNSPMSDRPLSRHRKSKSLVNVIMEEIMEKSDGAPASDTREVNSNKWNEKLVQRRQKSEADFTRIPEMLMREDNSSSGGLPSRTGKGLALRQKAASKTAVTTDSESSGLNPVPTGMGDAFLTYASTGVKKSSSTSCLQDQDNSNGSSSIWPSSMWNLKPDLQALSTAAIGKPLPKPITGRRNKAALD* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00381 355 Gene3D LysM domain 36 100 IPR036779 -
Rops1g00381 355 MobiDBLite consensus disorder prediction 299 320 - -
Rops1g00381 355 SMART LysM_2 50 94 IPR018392 -
Rops1g00381 355 MobiDBLite consensus disorder prediction 98 124 - -
Rops1g00381 355 MobiDBLite consensus disorder prediction 159 174 - -
Rops1g00381 355 SUPERFAMILY LysM domain 51 94 IPR036779 -
Rops1g00381 355 MobiDBLite consensus disorder prediction 335 355 - -
Rops1g00381 355 MobiDBLite consensus disorder prediction 31 47 - -
Rops1g00381 355 Pfam LysM domain 53 94 IPR018392 -
Rops1g00381 355 MobiDBLite consensus disorder prediction 159 182 - -
Rops1g00381 355 MobiDBLite consensus disorder prediction 240 281 - -
Rops1g00381 355 MobiDBLite consensus disorder prediction 27 50 - -
Rops1g00381 355 ProSiteProfiles LysM domain profile. 49 93 IPR018392 -
Rops1g00381 355 MobiDBLite consensus disorder prediction 263 279 - -
Rops1g00381 355 CDD LysM 57 93 IPR018392 -
Rops1g00381 355 PANTHER LYSM AND PUTATIVE PEPTIDOGLYCAN-BINDING DOMAIN-CONTAINING PROTEIN 28 281 IPR045030 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00381 Rops-Chr1 10481636 10485155 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00381 - - gmx:100786352 492.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00381 1 10481636 10485155 Rops1g00381 1 10481636 10485155 ECH