Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1475 ATGGGAAGACAAGCCGTCACCAGATTGCTGTCCTCCATCGCCGCGCGCCGCCATGGCCTCCGCCAATTCTCATCGGCCACTCCGGCGGTCTTTGTCGACAAGAGCACACGCGTCATCTGCCAAGGCATCACCGGCAAGAACGGCACCTTCCACACCGAACAGGCCATCGAATACGGCACCAACATGGTTGGTGGCGTGACTCCTAAGAAGGGCGGAACCGAACACTTGGGCCTTCCCGTCTTCAACACCGTCGCTGAAGCCAAGGCGGAAACCAAGGCCAACGCCTCCGTCATCTACGTCCCTCCGCCGTTCGCTGCCGCCGCCATCATGGAATCCATGGAGGCTGAGCTGGATCTTGTCGTCTGCATCACCGAGGGCATTCCTCAGCACGACATGGTGCGGGTTAAGGCAGCACTTAACCAGCAGTCCAAGACTCGTCTGATTGGACCAAACTGCCCTGGTATTATCAAGCCTGGGGAATGTAAAATTGGAATCATGCCAGGATATATTCATAAGCCTGGCCGCATAGGAATTGTCTCTCGTTCTGGTACCTTGACATATGAAGCAGTTTTCCAAACAACTGCTGTTGGCCTTGGACAATCCACTTGTGTGGGTATAGGAGGAGATCCCTTTAATGGAACAAACTTTGTTGACTGCCTTAGGAAGTTCATACCTGATCCTCAAACAGAAGGTATCATTCTTATAGGAGAGATAGGAGGAACTGCAGAAGAGGATGCTGCTGCACTAATTAAGGAAAGCGGCACTGAGAAGCCTATTGTTGCATTTATTGCTGGTTTGACTGCTCCCCCTGGCCGTCGTATGGGTCATGCTGGAGCTATCGTGTCGGGCGGCAAGGGCACTGCACAAGACAAAATTAGAACCCTCAGGGAAGCTGGTGTGACAGTTGTGGAGTCCCCTGCCAAAATTGGAGCTGCCATGCTAGATGTTTTCAAGCGGAGGGGCTTGGTGCAATAG 975 0.5323 MGRQAVTRLLSSIAARRHGLRQFSSATPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTNMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPFAAAAIMESMEAELDLVVCITEGIPQHDMVRVKAALNQQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLRKFIPDPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIRTLREAGVTVVESPAKIGAAMLDVFKRRGLVQ* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1475 324 PRINTS Succinyl-CoA synthase signature 109 126 - -
Pvu4g1475 324 PRINTS Succinyl-CoA synthase signature 205 223 - -
Pvu4g1475 324 PRINTS Succinyl-CoA synthase signature 236 249 - -
Pvu4g1475 324 PRINTS Succinyl-CoA synthase signature 269 286 - -
Pvu4g1475 324 PIRSF SucCS_alpha 25 320 IPR005810 GO:0003824
Pvu4g1475 324 Pfam CoA binding domain 33 126 IPR003781 -
Pvu4g1475 324 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 27 150 IPR036291 -
Pvu4g1475 324 SUPERFAMILY Succinyl-CoA synthetase domains 151 317 IPR016102 -
Pvu4g1475 324 Gene3D - 149 322 IPR016102 -
Pvu4g1475 324 Hamap Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 28 317 IPR005810 GO:0003824
Pvu4g1475 324 PANTHER SUCCINATE--COA LIGASE [ADP-FORMING] SUBUNIT ALPHA-1, MITOCHONDRIAL 8 323 - -
Pvu4g1475 324 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 265 278 IPR017440 -
Pvu4g1475 324 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 180 209 IPR033847 -
Pvu4g1475 324 SMART CoA_binding_2 31 127 IPR003781 -
Pvu4g1475 324 Gene3D - 29 148 - -
Pvu4g1475 324 Pfam CoA-ligase 179 300 IPR005811 GO:0003824
Pvu4g1475 324 PANTHER SUCCINYL-COA LIGASE SUBUNIT ALPHA 8 323 - -
Pvu4g1475 324 TIGRFAM sucCoAalpha: succinate-CoA ligase, alpha subunit 31 316 IPR005810 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1475 Pvu-Chr4 41805167 41810053 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1475 117 319 Acyl Lipid Metabolism Gene Families AT3G06650 31.308 3.37e-22 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1475 K01899 - gmx:100782001 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1475 4 41805167 41810053 Pvu4g1475 4 41805167 41810053 ECH