Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0376 ATGGGTCGCCGAGCTGTAGCGAAGTTGATAAGCTCGATCGCATCACTCGCCAAATCATCTTCATCGCCGTCACTTCTTTCTTCTTCCACTCAGATCCGCCATTTCACGTCAGCGCCACCCTCTCCTGCCGTTTTCGTTGACAAGACCACCCGCGTCATCTGCCAAGGAATCACCGGCAAGAATGGCACTTTCCACACCGAGCAGGCCATCGAATACGGAACCAAGATGGTGGGTGGTGTAACACCAAAGAAGGGTGGAACTGAACACTTGGGACTTCCTGTGTTTAACACTGTTGCTGAAGCAAAAGCTGAAACAAAGGCAAATGCTTCAGTCATCTATGTTCCTCCACCATTTGCTGCAGCTGCCATTTTGGAGTCAGTGGAAGCTGAGTTGGATCTTGTTGTCTGTATCACTGAAGGGATTCCTCAGCATGATATGGTACGAGTGAAAGCTGCTCTTAATAGACAGTCCAAGACTCGTCTGATTGGACCAAACTGCCCTGGTATCATCAAGCCAGGTGAATGTAAAATTGGAATCATGCCAGGTTACATTCATAAACCTGGTCGTATAGGAATTGTTTCTCGTTCTGGCACCTTGACATATGAAGCGGTTTTCCAAACTACTGCTGTTGGACTTGGACAATCCACTTGTGTGGGCATAGGTGGAGATCCTTTTAATGGAACAAACTTTGTTGATTGTGTGGAGCGATTCCTGGTAGATCCACAGACTGAAGGCATCATTCTCATAGGAGAGATAGGGGGAACTGCAGAAGAAGATGCTGCTGCACTAATTAAGGAAAGTGGGACTGAGAAGCCTATTGTTGCATTTATTGCTGGATTGACAGCTCCCCCTGGCCGTCGTATGGGTCATGCTGGAGCCATTGTGTCAGGCGGCAAGGGTACTGCTCAGGACAAAATTAAAACTCTGAGGGAAGCTGGGGTCACTGTAGTGGAGTCACCTGCTAAAATTGGAGCTGCCATTCTTGATGTTTTCAAGCACAGGGGCTTGGCCCAATAG 1017 0.4818 MGRRAVAKLISSIASLAKSSSSPSLLSSSTQIRHFTSAPPSPAVFVDKTTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPFAAAAILESVEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVERFLVDPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAILDVFKHRGLAQ 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0376 338 Hamap Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 42 331 IPR005810 GO:0003824
Lele46g0376 338 SUPERFAMILY Succinyl-CoA synthetase domains 165 333 IPR016102 -
Lele46g0376 338 Gene3D - 163 336 IPR016102 -
Lele46g0376 338 Pfam CoA binding domain 47 140 IPR003781 -
Lele46g0376 338 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 279 292 IPR017440 -
Lele46g0376 338 FunFam Succinate--CoA ligase [ADP-forming] subunit alpha 41 162 - -
Lele46g0376 338 PRINTS Succinyl-CoA synthase signature 123 140 - -
Lele46g0376 338 PRINTS Succinyl-CoA synthase signature 250 263 - -
Lele46g0376 338 PRINTS Succinyl-CoA synthase signature 283 300 - -
Lele46g0376 338 PRINTS Succinyl-CoA synthase signature 219 237 - -
Lele46g0376 338 FunFam Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial 163 336 - -
Lele46g0376 338 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 194 223 IPR033847 -
Lele46g0376 338 SMART CoA_binding_2 45 141 IPR003781 -
Lele46g0376 338 TIGRFAM sucCoAalpha: succinate-CoA ligase, alpha subunit 45 330 IPR005810 GO:0003824
Lele46g0376 338 PIRSF SucCS_alpha 41 334 IPR005810 GO:0003824
Lele46g0376 338 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 43 164 IPR036291 -
Lele46g0376 338 Gene3D - 43 162 - -
Lele46g0376 338 PANTHER SUCCINYL-COA LIGASE SUBUNIT ALPHA 31 336 - -
Lele46g0376 338 Pfam CoA-ligase 193 314 IPR005811 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0376 Lele-ChrLele46 2514528 2519047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0376 131 331 Acyl Lipid Metabolism Gene Families AT3G06650 32.547 1.33e-22 97.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele46g0376 46 2514528 2519047 Lele46g0376 46 2514528 2519047 ECH
Lele46g0376 46 2514528 2519047 Lele47g1047 47 16260618 16265252 hybridization
Lele46g0376 46 2514528 2519047 Lele48g1111 48 15823578 15828108 hybridization