Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3534 ATGACTTTCCACCGCGTAACGAAACTCTTCTCCACCCTCGCCACCTCCCGCCGCCACTACTCAACCACACCAACCCCCGCCGTCTTCGTCGACAAGAGCACACGCGTGATCTGTCAAGGAATAACCGGCAAAAACGGAACGTTTCACACCGAACAAGCGATCGAATATGGAACGAATATGGTTGGCGGTGTTACTCCGAAGAAAGGCGGAACGGAACATTTAGGGCTTCCGGTTTTCAATTCTGTTGCGGAGGCCAAAACTGAAACCAAAGCGAATGCTTCGGTTATTTATGTTCCTCCTCCTTTTGCTGCTGCTGCTATTATGGAAGCGGTTGAAGCTGAATTGGATCTTGTTGTTTGTATTACTGAAGGGATTCCTCAACATGATATGGTACGAGTTAAAGCAGCACTTAACAGACAGTCCAAAACTCGTTTGATAGGACCAAACTGCCCTGGTATCATCAAGCCTGGGGAATGTAAAATCGGAATCATGCCAGGTTACATTCATAAACCTGGACGCATTGGAATTGTTTCTCGTTCCGGAACTTTGACATATGAAGCGGTTTACCAAACTACTGCTGTTGGCCTTGGACAATCCACTTGTGTGGGTATTGGAGGAGATCCCTTCAATGGAACAAACTTTGTTGACTGCCTTACTAAGTTCCTAGCGGATCCTCAGACAGAAGGTATCATTCTCATAGGAGAGATAGGAGGAACTGCAGAAGAGGATGCTGCTGCTCTAATTAAGGAAAGCGGGACTGAGAAGCCCGTTGTTGCATTTATTGCCGGATTAACTGCTCCCCCTGGCCGTCGTATGGGTCATGCCGGAGCTATTGTGTCAGGTGGCAAGGGTACTGCTCAAGACAAAATCAGCACCCTAAGGGAAGCTGGAGTCACAGTTGTGGAGTCCCCAGCTAAAATTGGAGCTGCCATGTTTGATATATTCAAGCAGAAGGGTTTAGTGCAATAG 969 0.4768 MTFHRVTKLFSTLATSRRHYSTTPTPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTNMVGGVTPKKGGTEHLGLPVFNSVAEAKTETKANASVIYVPPPFAAAAIMEAVEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVYQTTAVGLGQSTCVGIGGDPFNGTNFVDCLTKFLADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKISTLREAGVTVVESPAKIGAAMFDIFKQKGLVQ* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3534 322 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 263 276 IPR017440 -
Mal6g3534 322 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 178 207 IPR033847 -
Mal6g3534 322 SUPERFAMILY Succinyl-CoA synthetase domains 149 313 IPR016102 -
Mal6g3534 322 PIRSF SucCS_alpha 24 318 IPR005810 GO:0003824
Mal6g3534 322 Gene3D - 27 146 - -
Mal6g3534 322 TIGRFAM sucCoAalpha: succinate-CoA ligase, alpha subunit 29 314 IPR005810 GO:0003824
Mal6g3534 322 Pfam CoA-ligase 177 298 IPR005811 GO:0003824
Mal6g3534 322 Pfam CoA binding domain 31 124 IPR003781 -
Mal6g3534 322 Gene3D - 147 320 IPR016102 -
Mal6g3534 322 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 25 148 IPR036291 -
Mal6g3534 322 PRINTS Succinyl-CoA synthase signature 234 247 - -
Mal6g3534 322 PRINTS Succinyl-CoA synthase signature 107 124 - -
Mal6g3534 322 PRINTS Succinyl-CoA synthase signature 203 221 - -
Mal6g3534 322 PRINTS Succinyl-CoA synthase signature 267 284 - -
Mal6g3534 322 PANTHER SUCCINATE--COA LIGASE [ADP-FORMING] SUBUNIT ALPHA-1, MITOCHONDRIAL 13 321 - -
Mal6g3534 322 Hamap Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 26 315 IPR005810 GO:0003824
Mal6g3534 322 PANTHER SUCCINYL-COA LIGASE SUBUNIT ALPHA 13 321 - -
Mal6g3534 322 SMART CoA_binding_2 29 125 IPR003781 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g3534 115 317 Acyl Lipid Metabolism Gene Families AT3G06650 31.776 2.79e-22 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g3534 K01899 - gmx:100815484 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g3534 6 104222969 104227541 Mal6g3534 6 104222969 104227541 ECH