LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun4g00592	ATGGGAAGACAAGCCGTCACCAGATTGCTGTCCTCCATCGCCTCGCGCCGCCATGGCCTCCGCCAATTCTCGGCGGCCACGCCGGCTGTGTTCGTCGACAAGAGCACACGCGTGATCTGCCAAGGCATCACTGGCAAAAACGGCACCTTTCACACCGAACAAGCCATCGAATACGGCACCAACATGGTTGGTGGTGTGACTCCTAAGAAGGGTGGAACCGAACACTTGGGCCTTCCCGTCTTCAACACCGTCGCTGAAGCCAAGGCGGAAACCAAGGCCAACGCCTCCGTCATCTACGTTCCTCCGCCGTTCGCTGCCGCCGCCATCATGGAAGCCATGGAGGCTGAGCTGGATCTTGTCGTCTGCATCACCGAGGGCATTCCTCAGCACGATATGGTGCGGGTTAAGGCAGCACTTAACCGGCAGTCCAAGACTCGTCTGATAGGACCAAACTGCCCTGGTATTATCAAGCCTGGGGAATGTAAAATTGGAATCATGCCAGGATATATTCATAAGCCTGGTCGCATAGGAATTGTCTCTCGTTCTGGTACCTTGACATATGAAGCAGTTTTCCAAACAACTGCTGTTGGCCTTGGACAATCCACGTGTGTGGGTATTGGAGGAGATCCCTTTAATGGAACAAACTTTGTTGACTGCCTTAGGAAGTTCCTAGTTGATCCTCAAACAGAAGGTATAATTCTTATAGGAGAGATAGGAGGAACTGCAGAAGAGGATGCTGCTGCACTAATTAAGGAAAGCGGCACTGAGAAGCCTATTGTTGCATTTATTGCTGGTTTGACTGCCCCTCCTGGCCGTCGAATGGGTCATGCTGGAGCTATTGTGTCGGGCGGCAAGGGAACTGCACAAGACAAAATCAGAACCCTCAGGGAAGCTGGGGTGACAGTCGTGGAGTCCCCTGCCAAAATTGGAGCTGCCATGCTAGACGTTTTCAAGCAGAGGGGCTTGGTGCAATAG	975	0.5282	MGRQAVTRLLSSIASRRHGLRQFSAATPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTNMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLRKFLVDPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIRTLREAGVTVVESPAKIGAAMLDVFKQRGLVQ	324

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun4g00592	324	Gene3D	-	29	148	-	-
	Viun4g00592	324	PANTHER	SUCCINYL-COA LIGASE SUBUNIT ALPHA	21	322	-	-
	Viun4g00592	324	SMART	CoA_binding_2	31	127	IPR003781	-
	Viun4g00592	324	NCBIfam	succinate--CoA ligase subunit alpha	31	316	IPR005810	GO:0003824
	Viun4g00592	324	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	28	150	IPR036291	-
	Viun4g00592	324	Pfam	CoA binding domain	33	126	IPR003781	-
	Viun4g00592	324	ProSitePatterns	ATP-citrate lyase / succinyl-CoA ligases family signature 1.	180	209	IPR033847	-
	Viun4g00592	324	FunFam	Succinate--CoA ligase [ADP-forming] subunit alpha	27	148	-	-
	Viun4g00592	324	PIRSF	SucCS_alpha	25	320	IPR005810	GO:0003824
	Viun4g00592	324	PRINTS	Succinyl-CoA synthase signature	236	249	-	-
	Viun4g00592	324	PRINTS	Succinyl-CoA synthase signature	269	286	-	-
	Viun4g00592	324	PRINTS	Succinyl-CoA synthase signature	205	223	-	-
	Viun4g00592	324	PRINTS	Succinyl-CoA synthase signature	109	126	-	-
	Viun4g00592	324	SUPERFAMILY	Succinyl-CoA synthetase domains	151	319	IPR016102	-
	Viun4g00592	324	Hamap	Succinate--CoA ligase [ADP-forming] subunit alpha [sucD].	28	317	IPR005810	GO:0003824
	Viun4g00592	324	ProSitePatterns	ATP-citrate lyase / succinyl-CoA ligases family active site.	265	278	IPR017440	-
	Viun4g00592	324	Pfam	CoA-ligase	179	300	IPR005811	GO:0003824
	Viun4g00592	324	Gene3D	-	149	322	IPR016102	-
	Viun4g00592	324	FunFam	Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial	149	322	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun4g00592	117	319	Acyl Lipid Metabolism Gene Families	AT3G06650	31.308	6.01e-22	94.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun4g00592	K01899		-	gmx:100782001	605.134

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Viun4g00592	4	3856504	3860625	Viun4g00592	4	3856504	3860625	ECH