Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00404 ATGGGAAGACAAGCCGTGACAAAGTTGCTGTCCATCGCCGCGCGCCGCCACGGCATCCGCCAATTCTCGTCGGCGACGCCCGCGGTCTTCGTCGACAAGAGCACGCGCGTGATCTGCCAAGGCATCACCGGCAAGAACGGCACCTTCCACACCGAGCAAGCCATCGAATACGGCACCAACATGGTTGGCGGTGTCACTCCCAAGAAAGGCGGAACGGAGCACCTCGGCCTTCCCGTCTTCAACACCGTCgccgaagccaaggccgaaaccaaggccaacgcTTCCGTCATCTACGTCCCTCCGCCGTTCGCCGCCGCCGCCATCATGGAGGCCATGGAGGCTGAGTTGGATCTCGTCGTCTGCATCACCGAGGGGATTCCTCAGCACGACATGGTGCGGGTTAAGGCAGCGCTGAACAGGCAGTCCAAGACTCGTTTGATAGGACCAAACTGCCCTGGTATTATCAAGCCTGGGGAATGTAAAATTGGAATCATGCCTGGTTATATTCATAAGCCTGGGCGCATTGGAATTGTCTCTCGTTCTGGTACCTTGACATATGAAGCAGTTTTTCAAACGACTGCTGTTGGCCTTGGACAATCCACTTGTGTGGGTATAGGAGGAGATCCCTTTAATGGAACAAACTTTGTTGACTGCCTTAAGAAGTTCCTAGCAGATCCTCAAACAGAAGGTATCATTCTTATAGGAGAGATAGGAGGAACTGCAGAAGAGGATGCTGCTGCACTAATTAAGGAAAGCGGTACTGAGAAGCCTGTTGTTGCATTTATTGCTGGTTTAACTGCTCCTCCTGGTCGTCGTATGGGTCATGCTGGAGCTATTGTGTCGGGTGGCAAGGGAACTGCACAAGACAAAATTAAAACCCTCAGGGAAGCTGGGGTCACAGTTGTGGAGTCCCCTGCCAAAATTGGAGCAGCCATGCTAGATGTTTTCAAGCAGAAGGGCTTGGTGCAATAG 972 0.5113 MGRQAVTKLLSIAARRHGIRQFSSATPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTNMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLKKFLADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLDVFKQKGLVQ 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00404 323 Pfam CoA binding domain 32 125 IPR003781 -
Cca08g00404 323 Gene3D - 28 147 - -
Cca08g00404 323 SMART CoA_binding_2 30 126 IPR003781 -
Cca08g00404 323 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 264 277 IPR017440 -
Cca08g00404 323 Hamap Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 27 316 IPR005810 GO:0003824
Cca08g00404 323 TIGRFAM sucCoAalpha: succinate-CoA ligase, alpha subunit 30 315 IPR005810 GO:0003824
Cca08g00404 323 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 179 208 IPR033847 -
Cca08g00404 323 PANTHER SUCCINYL-COA LIGASE SUBUNIT ALPHA 18 322 - -
Cca08g00404 323 Pfam CoA-ligase 178 299 IPR005811 GO:0003824
Cca08g00404 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 26 149 IPR036291 -
Cca08g00404 323 Gene3D - 148 321 IPR016102 -
Cca08g00404 323 PANTHER SUCCINATE--COA LIGASE [ADP-FORMING] SUBUNIT ALPHA-1, MITOCHONDRIAL 18 322 - -
Cca08g00404 323 PRINTS Succinyl-CoA synthase signature 108 125 - -
Cca08g00404 323 PRINTS Succinyl-CoA synthase signature 204 222 - -
Cca08g00404 323 PRINTS Succinyl-CoA synthase signature 235 248 - -
Cca08g00404 323 PRINTS Succinyl-CoA synthase signature 268 285 - -
Cca08g00404 323 SUPERFAMILY Succinyl-CoA synthetase domains 150 316 IPR016102 -
Cca08g00404 323 PIRSF SucCS_alpha 24 319 IPR005810 GO:0003824
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00404 116 318 Acyl Lipid Metabolism Gene Families AT3G06650 31.776 3.60e-22 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00404 K01899 - gmx:100782001 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00404 08 6133163 6138501 Cca08g00404 08 6133163 6138501 ECH