Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1082 ATGAAAGGAGAGAGATCTGGTGGTGGTGGTGGGTGCTTGATGAGTGGCGGTGGTGGTGGAAGGTGTGCTGCTACAAATTCAAATTCACATGTAAATGGTGTGAATTACATTCTACATACAGTATCCAAGATGGATACTCTTGCTGGTGTGGCCATCAAGTATGGTGTTGAGGTGGCTGATATCAAGAGGATGAATGGTTTGGCCACAGATCTTCAAATGTTTGCTTTGAAGTCATTGCAGATACCCTTGCCAGGCAGACATCCTCCGTCCCCGGTGTTGTCCAATGCTTCTACATCTTCAGGAGAAAGGAGCACCGAAGAAACACCACTGCATCTGAGCCACTCCAATGTCTTGGAATCACTCCAGTCCTTAGGGTTGAAAACACCCCAAAAGAAAGTTTCTCCAGCCATGAGTACTTTACAGAACTATTATGGTCTCAAATCTCAAGACAAAAATCAAAATGGTGGGGCTGAGGGCATGGAAATGACGGTCTACGGAGCAGGGAAACCTCATGGCTTCGACTTTGGACTTCTGCCCAAAGCATTACCTATTTCTGAGCCATCTTCAAACCAAGACCACAAGTCCCGAAATTTAGCTAATGGTTTCTTCGCTGAGAATGGTACAGTAGCTGCTGATGTCCCTATATCTGAAGCTGGAGATGGGGAGGGTGAGAGGTCTAATGAGAAGTCGGTCCGAAGGCGTCAGAAATCAGAAGCTGATTCTGGGGCTGGACCAGAAAGGTTGCTGAAAGAAGAAAACAGCGGTGGCAGTAGCGGTTTTTCTGCTATAACAGGGAAGGGGTTAGCCCTGAGACCGAAATCTGCAAGCCGGACTGCATTGTCTGCAGATGCTGAATCAAGTTGGTTGAATGCTATCCCAGTGGGCTTGGGAGACTCCATCATGCCTGAAGGGCTCACCTCGGTCCGCAAATCATCAAGCACACCAAGCCTACAAGAGCATGACCAGAATAATAGTTCCTCATCTGTATGGCCAACATCATGGAACTTGAAACCAGACTTGCAGGCTCTCTCTGCCAGACCAATCTTTGACGGGTTACCGAAGCCCATCACTGGCCGCAAGAACAAAGCGGCCCTTGATTAG 1101 0.4814 MKGERSGGGGGCLMSGGGGGRCAATNSNSHVNGVNYILHTVSKMDTLAGVAIKYGVEVADIKRMNGLATDLQMFALKSLQIPLPGRHPPSPVLSNASTSSGERSTEETPLHLSHSNVLESLQSLGLKTPQKKVSPAMSTLQNYYGLKSQDKNQNGGAEGMEMTVYGAGKPHGFDFGLLPKALPISEPSSNQDHKSRNLANGFFAENGTVAADVPISEAGDGEGERSNEKSVRRRQKSEADSGAGPERLLKEENSGGSSGFSAITGKGLALRPKSASRTALSADAESSWLNAIPVGLGDSIMPEGLTSVRKSSSTPSLQEHDQNNSSSSVWPTSWNLKPDLQALSARPIFDGLPKPITGRKNKAALD* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1082 366 MobiDBLite consensus disorder prediction 347 366 - -
Vvi17g1082 366 Pfam LysM domain 39 70 IPR018392 -
Vvi17g1082 366 SMART LysM_2 38 82 IPR018392 -
Vvi17g1082 366 MobiDBLite consensus disorder prediction 84 112 - -
Vvi17g1082 366 SUPERFAMILY LysM domain 37 77 IPR036779 -
Vvi17g1082 366 MobiDBLite consensus disorder prediction 218 247 - -
Vvi17g1082 366 MobiDBLite consensus disorder prediction 91 112 - -
Vvi17g1082 366 MobiDBLite consensus disorder prediction 212 283 - -
Vvi17g1082 366 CDD LysM 39 81 IPR018392 -
Vvi17g1082 366 PANTHER LYSM AND PUTATIVE PEPTIDOGLYCAN-BINDING DOMAIN-CONTAINING PROTEIN 21 296 IPR045030 -
Vvi17g1082 366 ProSiteProfiles LysM domain profile. 37 81 IPR018392 -
Vvi17g1082 366 MobiDBLite consensus disorder prediction 305 333 - -
Vvi17g1082 366 MobiDBLite consensus disorder prediction 299 333 - -
Vvi17g1082 366 Gene3D LysM domain 23 88 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1082 Vvi-Chr17 14702777 14720689 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1082 - - vvi:100266699 710.679