Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0910 ATGGCTCGCCACGCCGTAACTAAATTGATCTCATCCATCGCATCGCGCCGCCACAACATCCGTCACTTCTCGGCGGCGCCATCCTCCCCCGCTGTTTTTGTTGACAAGACCACTCGCGTGATTTGTCAAGGCATCACCGGCAAGAACGGCACCTTCCACACCGAACAAGCCATCGAATATGGAACCAATATGGTTGGCGGTGTGACTCCGAAGAAAGGTGGAACGGAACACTTAGGGCTTCCAGTGTTTAACACTGTTGCTGAAGCTAAGGCTGATACTAAGGCCAATGCTTCTGTTATCTATGTTCCTCCGCCTTTTGCTGCTGCTGCTATTTTGGAGGCTTTGGAAGCTGAGTTGGATCTTATTGTCTGCATCACTGAAGGAATTCCCCAGCATGACATGCTTTGTTCCTACAATATAGGCATGATACGATTAGGAATCAATGTATTAGAATCTCACGTTGGGTGGTTTGGTAATGTGTGGAGAATCCCTAAAGAAGCCCTTTCAATGCGATTAGATCAGATGGAGGGTAGTCCAATTGCTGGAGGTAGAGAGAGACCAAAAAAAACTATAGCCGTACGTGTTAAAGCTGCAATTAACAGCCAGTCCAAAACTCGCCTGATAGGACCAAACTGCCCTGGTATCATCAAGCCCGGGGAATGTAAAATTGGAATCATGCCAGGTTACATTCATAAACCAGGACGTATAGGAATTGTTTCTCGTTCTGGTACCTTGACATATGAAGCGGTTTTTCAAACGACTGCTGTTGGCCTTGGACAATCCACTTGTGTGGGTATAGGAGGAGATCCATTTAATGGAACAAACTTTGTTGACTGTCTTCAGAAGTTCCTAGTAGATCCTCAGACAGAAGGTATCATTCTAATAGGAGAAATAGGAGGAACTGCTGAAGAGGATGCTGCTGCACTAATTAAGGAAAGTGGGACTGAGAAGCCTGTTGTTGCATTTATTGCTGGATTAACTGCTCCCCCTGGCCGCCGTATGGGTCATGCTGGAGCTATTGTGTCTGGTGGCAAGGGGACAGCACAAGACAAAATTAAAACTCTCAGGGAAGCTGGGGTCACAGTTGTGGAGTCACCTGCTAAAATTGGAGCTGCCATGCTAGATGTTTTCAAGCAGAGGGGCTTAGTTGAATAG 1155 0.4675 MARHAVTKLISSIASRRHNIRHFSAAPSSPAVFVDKTTRVICQGITGKNGTFHTEQAIEYGTNMVGGVTPKKGGTEHLGLPVFNTVAEAKADTKANASVIYVPPPFAAAAILEALEAELDLIVCITEGIPQHDMLCSYNIGMIRLGINVLESHVGWFGNVWRIPKEALSMRLDQMEGSPIAGGRERPKKTIAVRVKAAINSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLQKFLVDPQTEGIILIGEIGGTAEEDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLDVFKQRGLVE 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0910 384 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 30 135 IPR036291 -
Lal10g0910 384 Gene3D - 27 144 - -
Lal10g0910 384 Pfam CoA binding domain 35 128 IPR003781 -
Lal10g0910 384 SMART CoA_binding_2 33 129 IPR003781 -
Lal10g0910 384 SUPERFAMILY Succinyl-CoA synthetase domains 211 379 IPR016102 -
Lal10g0910 384 PANTHER SUCCINYL-COA LIGASE SUBUNIT ALPHA 192 383 - -
Lal10g0910 384 PANTHER SUCCINYL-COA LIGASE SUBUNIT ALPHA 7 135 - -
Lal10g0910 384 Pfam CoA-ligase 239 360 IPR005811 GO:0003824
Lal10g0910 384 Hamap Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 30 377 IPR005810 GO:0003824
Lal10g0910 384 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 325 338 IPR017440 -
Lal10g0910 384 Gene3D - 205 382 IPR016102 -
Lal10g0910 384 PANTHER SUCCINATE--COA LIGASE [ADP-FORMING] SUBUNIT ALPHA-1, MITOCHONDRIAL 192 383 - -
Lal10g0910 384 PANTHER SUCCINATE--COA LIGASE [ADP-FORMING] SUBUNIT ALPHA-1, MITOCHONDRIAL 7 135 - -
Lal10g0910 384 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 240 269 IPR033847 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0910 Lal-Chr10 16533738 16538453 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0910 207 384 Acyl Lipid Metabolism Gene Families AT3G06650 33.333 1.14e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0910 K01899 - gmx:100815484 373.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0910 10 16533738 16538453 Lal10g0910 10 16533738 16538453 ECH
Lal8g0507 8 3466639 3484480 Lal10g0910 10 16533738 16538453 LSH