Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0786 ATGTCGCCGTCAAACGGGTTGCAGAACGGCGGCGGCGGAGGCGGCGGTAATGGGTTGAGTTACATAGAGCACCAGGTTTCAAAGTTTGACACTCTTGCTGGTGTGGCGATCAAGTATGGTGTTGAGGTAGCTGACGTCAAAAGGATGAATGGCTTAGCCACAGATCTTCAAATGTTTGCACTGAAGACATTGAAAATTCCATTGCCAGGACGTCATCCACCATCTCCTGCCCCTGGTCCACAAGATGAACCTGCCAAGTCGGGAGATTCTAGCGTTGAGAGGAAACCCATACGCATAGGTCAATCTGCCATGAAGGAACCTCTCCTGTCCTTACGACTGAAACCTCCTCAACCAAATATTTCTCCAGCTATGAGCATTTTACAGAAATTCTATGGCCTCAAATCTTCAGATTCTAAAGACACATTCAATGGAACAGAAATGGCAGTTTATACACCCGTGAGTTCTGATCATTCTAGAGGGGAATGGCTTCCCAAAGCTTCTCCAATTTCAGACCTTCCATCAGCAACAAATGATTACCCCAAGTCAACAAATTTAGTCTATGATCTACTGACAGGGGATGGTGATTACACTCCTCTTGCAGAAATTGTGGACGGAGGATCTGAGAAGTCTGATGAGAAATCTGTCCGAAGACGTCAGAAAGCTGAAGTTGATAATGGAGCCACTACCCCAGAAAAGTTTTTGAAAGAAGGAAATGGCAATGGATCAAATGGTTTTTCTTCAACCGGAAAAACATTAGCCATGAGGCCGAAATCGGCTAGCCGAGCAGCACTGTTTCCTGATTCAGAATCAGGATGGTTAGATTCAATTCCAGTGGGGTTGGGAGAATCTATATTCACCGATGCCCTTTCTGGTGTGCGCAAATCATCTAGTGCATCAAGCCTCAGAGAGCAGGAAAAGATCAACTCAGCAACAGCCTGGTCGCCGGCAATATGGAACTTGAAACCAGACTTGCAAGCAGCCATTTCCAAGCCTATCTTTGATGGTTTGCCAATTCCAATCACTGGCCGCAGAAGCAAAGCTGCCCTTGATTAG 1053 0.4625 MSPSNGLQNGGGGGGGNGLSYIEHQVSKFDTLAGVAIKYGVEVADVKRMNGLATDLQMFALKTLKIPLPGRHPPSPAPGPQDEPAKSGDSSVERKPIRIGQSAMKEPLLSLRLKPPQPNISPAMSILQKFYGLKSSDSKDTFNGTEMAVYTPVSSDHSRGEWLPKASPISDLPSATNDYPKSTNLVYDLLTGDGDYTPLAEIVDGGSEKSDEKSVRRRQKAEVDNGATTPEKFLKEGNGNGSNGFSSTGKTLAMRPKSASRAALFPDSESGWLDSIPVGLGESIFTDALSGVRKSSSASSLREQEKINSATAWSPAIWNLKPDLQAAISKPIFDGLPIPITGRRSKAALD* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0786 350 ProSiteProfiles LysM domain profile. 22 66 IPR018392 -
Vra1g0786 350 MobiDBLite consensus disorder prediction 235 251 - -
Vra1g0786 350 SMART LysM_2 23 67 IPR018392 -
Vra1g0786 350 PANTHER OS06G0729900 PROTEIN 3 350 - -
Vra1g0786 350 CDD LysM 22 66 IPR018392 -
Vra1g0786 350 MobiDBLite consensus disorder prediction 67 99 - -
Vra1g0786 350 Gene3D LysM domain 18 73 IPR036779 -
Vra1g0786 350 PANTHER LOC443603 PROTEIN-RELATED 3 350 IPR045030 -
Vra1g0786 350 MobiDBLite consensus disorder prediction 202 251 - -
Vra1g0786 350 MobiDBLite consensus disorder prediction 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0786 Vra-Chr1 9322526 9325398 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0786 - - gmx:100786430 585.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0786 1 9322526 9325398 Vra1g0786 1 9322526 9325398 ECH