Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi17g1083 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1084 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1085 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1086 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1087 Acco01g0515 . Accr1g00332 . . . Aed7g0375 . . . . . . . Alju02g3378 . . . Apr6g0910 Apr2g1623 Arst5g02838 . Bach1g01366 . Bisa01g0498 . Bva04g00972 . . . Cca08g00401 . Dere06g1638 . . . Enph12g1062 . Glsi01g1849 . . . . Gma09g01557 . . . . . . . . . . . . . . . . Lapu4g00360 . Lasa1g02199 . . . . . . . . . Lja2g2325 . . Mal6g3531 Mepo7g00719 . . . Mibi01g3152 . . Mtr6g2007 . . . . . . . . Pste9g01356 . . Pte9g00215 . . Pumo6g02847 . Pvu4g1478 . Rops5g00509 . Seca10g04531 . Spst4g02944 . Ssu5g3555 . . Sto10g2726 . Tpr2g5163 Trre11g01803 . . Tsu06g03528 Vian8g01301 . . . Vimu8g01757 . Viun4g00588 . Vivi2g05850 . Vra1g0785 .
Vvi17g1088 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1089 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1090 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1091 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1092 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi17g1083 Chr17 14740610 14741145 -
Vvi Vvi17g1084 Chr17 14803357 14807881 +
Vvi Vvi17g1085 Chr17 14820217 14828417 +
Vvi Vvi17g1086 Chr17 14860772 14867885 -
Vvi Vvi17g1087 Chr17 14868191 14869300 -
Acco Acco01g0515 Chr01 6206295 6209128 -
Accr Accr1g00332 Chr1 6705042 6706271 -
Aed Aed7g0375 Chr7 2789482 2793764 +
Alju Alju02g3378 Chr02 51656356 51657945 +
Apr Apr6g0910 Chr6 13511705 13518403 -
Apr Apr2g1623 Chr2 21949015 21951446 +
Arst Arst5g02838 Chr5 83798697 83800343 -
Bach Bach1g01366 Chr1 27114825 27116083 -
Bisa Bisa01g0498 Chr01 7170402 7171550 +
Bva Bva04g00972 Chr04 6379320 6384243 +
Cca Cca08g00401 Chr08 6104100 6110144 +
Dere Dere06g1638 Chr06 30889752 30892877 -
Enph Enph12g1062 Chr12 17578927 17580767 -
Glsi Glsi01g1849 Chr01 82050706 82051838 -
Gma Gma09g01557 Chr09 40672861 40679448 -
Lapu Lapu4g00360 Chr4 3659531 3671810 +
Lasa Lasa1g02199 Chr1 244143265 244144296 +
Lja Lja2g2325 Chr2 27871103 27878423 +
Mal Mal6g3531 Chr6 104186601 104187752 +
Mepo Mepo7g00719 Chr7 11595176 11596579 -
Mibi Mibi01g3152 Chr01 55519264 55521789 +
Mtr Mtr6g2007 Chr6 36515227 36521965 +
Pste Pste9g01356 Chr9 12308902 12310781 -
Pte Pte9g00215 Chr9 2479991 2484263 -
Pumo Pumo6g02847 Chr6 68038662 68043701 -
Pvu Pvu4g1478 Chr4 41842450 41844030 -
Rops Rops5g00509 Chr5 8612174 8617318 +
Seca Seca10g04531 Chr10 103460043 103461143 -
Spst Spst4g02944 Chr4 69061033 69062127 +
Ssu Ssu5g3555 Chr5 86818423 86819466 +
Sto Sto10g2726 Chr10 37468132 37471896 -
Tpr Tpr2g5163 Chr2 57754618 57763064 -
Trre Trre11g01803 Chr11 17587534 17592865 -
Tsu Tsu06g03528 Chr06 46429164 46434777 -
Vian Vian8g01301 Chr8 31953123 31954229 -
Vimu Vimu8g01757 Chr8 23487055 23500175 +
Viun Viun4g00588 Chr4 3825026 3832722 +
Vivi Vivi2g05850 Chr2 188438827 188442813 -
Vra Vra1g0785 Chr1 9305300 9313797 +
Vvi Vvi17g1088 Chr17 14953743 14955539 -
Vvi Vvi17g1089 Chr17 14981360 14986187 -
Vvi Vvi17g1090 Chr17 15026785 15029514 +
Vvi Vvi17g1091 Chr17 15066109 15066507 -
Vvi Vvi17g1092 Chr17 15070080 15071309 -