Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00403 ATGCTCACTGCCGTCGCCATTCACTCCCTCCTCCGCCTCCTCCGTCTCGCTGTCCACATCCGCAAGGTCTGCGTCCTCACCGCCCCCTTCTTCGCCTCCAACACCACCCTCGTCGCTTACTTCTTCGCCAAGGAGGTTTGGGACTCCGGCGCCGGCCTCGTCGCCGCCGCGCTCATCGCGATCTGCCCCGGCTACATCTCCCGCTCCGTCGCCGGCTCCTACGACAACGAGGGGGTTGCGATCTTCGCCCTCTTGCTCACGTTTTACCTCTTTGTGAAGGCTGTGAATACTGGGTCGCTGGCGTGGTCTTTGGGCTCGGCGTTTGGGTATTTCTACATGGTTTCGGCGTGGGGGGGTTATGTGTTTATAATCAACTTGGTGCCGCTTTATGTGTTGGTGCTGCTGGTCACGGGGAGGTACTCGTTGAGGCTCTATGTGGCGTATAACTGCATGTATGTTTTGGGAATGTTGTTGGCTATGCAGATTAGGTTTGTGGGATTCCAGCATGTGCAGTCCGGGGAGCACATGGCGGCAATGGGCGTCTTTTTCTTGCTGCAGGTATTTTTCTTCTTGGATTGGGTGAGGCATTTGCTGAGTGATACAAAGTTGTTTCAGGCATTTTTGAGGATCACTGTGACCAGTGCGGTTGCTGTTGGTGCTGTTGCTTTGGGAGTAGGCATGGCATCTGGTTATATATCTCCATGGACTGGGAGGTTTTACTCCTTGCTTGATCCAACGTATGCTAAGGATCACATTCCGATTATTGCATCGGTCTCTGAGCATCAGCCTACTGCTTGGTCATCCTTCATGTTTGATTTCCATATCTTGTTGTTCCTTTTCCCAGCTGGCCTATATTTTTGCTTCAAGCGCTTGTCTGATGCTACAATCTTTTTAGTTATGTATGGTCTTACAAGCATGTATTTTGCCGGGGTTATGGTTCGGCTGATTCTTGTTGCTACCCCTGCTGTGTGCCTCATTAGTGCTATTGCAGTTTCTGCCACCGTGAAGAATTTGACTCGGTTAGTTAGGGCCAAAAGCCCATCTGTTCAAAGTGGATCTAGTAAAGGAACTAGCACTGCAAAAGGTTCTTCTAAGGGTGTAGTTGACAATTCCCAGCCTTTCCAAAAAAATGGTGCTATTGTGTTACTCCTTGGTGCTTTCTATTTGCTCAGCAGATATGCTATTCACTGCACTTGGGTCACATCAGAGGCCTACTCATCTCCCTCAATTGTCTTGGCTGCAAGGGGTGCCCATGGCAACAGGGTCATTTTTGATGATTATCGTGAGGCTTACTTTTGGCTTCGCCAGAACACTCCACCAGATGCCAAGGTGATGTCATGGTGGGATTATGGTTATCAAATCACTGCCATGGGAAACAGAACGGTTATTGTTGACAATAATACCTGGAACAACACACACATAGCTACTGTTGGGCGAGCAATGTCATCCTATGAAGATGAGGCTTATGAAATAATGAGATCGCTCGATGTTGACTATGTATTAGTCGTGTTTGGTGGTGTTACTGGTTATTCTTCTGATGATATTAATAAATTTCTTTGGATGGTGAGAATTGGTGGTGGAGTTTTTCCTGTGATAAAGGAACCTGATTATCTTGTCAATGGAGAATATCGTGTAGATAAAGGAGCAGCACCAAAGATGTTGAACTGTCTTATGTACAAGCTGTCTTATTATCGGTTTGGAGAGCTGACAACTGAATATGGCAAACCACCTGGATATGATCGAGCTAGAGGTGTTGAAATTGGAAATAAGGACATAAAGCTTGAGTACTTGGAAGAGGCGTTCACTACACAGAATTGGATAGTTCGTATTTATAAAGTGAAACCACCTAAAAACAGGTGGTAA 1863 0.4713 MLTAVAIHSLLRLLRLAVHIRKVCVLTAPFFASNTTLVAYFFAKEVWDSGAGLVAAALIAICPGYISRSVAGSYDNEGVAIFALLLTFYLFVKAVNTGSLAWSLGSAFGYFYMVSAWGGYVFIINLVPLYVLVLLVTGRYSLRLYVAYNCMYVLGMLLAMQIRFVGFQHVQSGEHMAAMGVFFLLQVFFFLDWVRHLLSDTKLFQAFLRITVTSAVAVGAVALGVGMASGYISPWTGRFYSLLDPTYAKDHIPIIASVSEHQPTAWSSFMFDFHILLFLFPAGLYFCFKRLSDATIFLVMYGLTSMYFAGVMVRLILVATPAVCLISAIAVSATVKNLTRLVRAKSPSVQSGSSKGTSTAKGSSKGVVDNSQPFQKNGAIVLLLGAFYLLSRYAIHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPPDAKVMSWWDYGYQITAMGNRTVIVDNNTWNNTHIATVGRAMSSYEDEAYEIMRSLDVDYVLVVFGGVTGYSSDDINKFLWMVRIGGGVFPVIKEPDYLVNGEYRVDKGAAPKMLNCLMYKLSYYRFGELTTEYGKPPGYDRARGVEIGNKDIKLEYLEEAFTTQNWIVRIYKVKPPKNRW 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00403 620 Pfam Oligosaccharyl transferase STT3 subunit 2 406 IPR003674 GO:0004576|GO:0006486|GO:0016020
Cca08g00403 620 Gene3D - 423 573 - -
Cca08g00403 620 PANTHER DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT 1 620 IPR003674 GO:0004576|GO:0006486|GO:0016020
Cca08g00403 620 MobiDBLite consensus disorder prediction 348 367 - -
Cca08g00403 620 PANTHER DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT STT3B 1 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00403 Cca-Chr8 6125557 6132023 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00403 1 619 Miscellaneous Gene Families AT1G34130 87.399 0.0 1104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00403 K07151 - gmx:100816018 1177.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00403 08 6125557 6132023 Cca08g00403 08 6125557 6132023 ECH