Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2328 ATGGGGTTGCAACCGCTGAACAAGTTGATGGCCTCCATCGCCGCGCGCCGCCACTGCATCCGCCACCTATCAGCAACAGCCTCATCGCCGGCGGTGTTCGTCGACAAGAGCACGCGCGTGATCTGCCAGGGGATCACAGGGAAGAACGGCACCTTCCACACGGAACAAGCCATCGAATACGGAACCAACATGGTCGGCCTTCCCGTTTTCAACACCGTCGCTGAAGCCAAGGCTGAGACCAAGGCCAACGCCTCCGTCATCTATGTTCCTCCGCCTTTCGCCGCCAAAGCCATCATGGAGGCCTTGGAGGCTGAGTTGGATCTCGTTGTTTGCATCACTGAAGGCATCCCTCAACATGATATGGTGCGAGTTAAAGCAGCGATTAACAGACAGTCGAAAACTCGTCTGATAGGACCAAACTGCCCTGGTATCATCAAGCCTGGGGAATGTAAAATCGGAATCATGCCGGGTTACATTCATAAGCCTGGGCGCATTGGAATTGTTTCTCGTTCTGGTACTTTGACGTATGAGGCGGTTTTCCAAACGTCTGCTGTTGGCCTTGGACAATCCACTTGTGTGGGTATCGGAGGAGATCCCTTTAATGGAACAAATTTTGTTGATTGCCTTAAGAAATTCCTATCAGATCCTCAGACAGAAGGTATCGTTCTTATAGGAGAGATAGGTGGAACTGCAGAGGAGGATGCTGCTGCACTAATTAAGGAAAGCGGGACTGAGAAGCCTATTGTTGCATTTATTGCTGGATTAACTGCTCCCCCTGGCCGCCGTATGGGTCATGCTGGAGCTATTGTGTCGGGTGGCAAGGGTACTGCACAAGACAAAATTAAAACCCTCAAGGAAGCTGGGGTCACAGTTGTGGAGTCCCCTGCTAAAATTGGAACTGCCATGCTAGAAGTTTTCAAGCAGAGAGGCTTGGTTCAACAATAG 945 0.5122 MGLQPLNKLMASIAARRHCIRHLSATASSPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTNMVGLPVFNTVAEAKAETKANASVIYVPPPFAAKAIMEALEAELDLVVCITEGIPQHDMVRVKAAINRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTSAVGLGQSTCVGIGGDPFNGTNFVDCLKKFLSDPQTEGIVLIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLKEAGVTVVESPAKIGTAMLEVFKQRGLVQQ* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2328 314 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 254 267 IPR017440 -
Lja2g2328 314 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 30 139 IPR036291 -
Lja2g2328 314 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 169 198 IPR033847 -
Lja2g2328 314 SMART CoA_binding_2 33 116 IPR003781 -
Lja2g2328 314 PANTHER SUCCINYL-COA LIGASE SUBUNIT ALPHA 8 312 - -
Lja2g2328 314 TIGRFAM sucCoAalpha: succinate-CoA ligase, alpha subunit 33 305 IPR005810 GO:0003824
Lja2g2328 314 PIRSF SucCS_alpha 27 309 IPR005810 GO:0003824
Lja2g2328 314 Gene3D - 31 137 - -
Lja2g2328 314 PANTHER SUCCINATE--COA LIGASE [ADP-FORMING] SUBUNIT ALPHA-1, MITOCHONDRIAL 8 312 - -
Lja2g2328 314 Pfam CoA-ligase 168 289 IPR005811 GO:0003824
Lja2g2328 314 Pfam CoA binding domain 35 115 IPR003781 -
Lja2g2328 314 PRINTS Succinyl-CoA synthase signature 194 212 - -
Lja2g2328 314 PRINTS Succinyl-CoA synthase signature 258 275 - -
Lja2g2328 314 PRINTS Succinyl-CoA synthase signature 225 238 - -
Lja2g2328 314 PRINTS Succinyl-CoA synthase signature 98 115 - -
Lja2g2328 314 Gene3D - 138 312 IPR016102 -
Lja2g2328 314 Hamap Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 30 306 IPR005810 GO:0003824
Lja2g2328 314 SUPERFAMILY Succinyl-CoA synthetase domains 140 309 IPR016102 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2328 Lja-Chr2 27911820 27915440 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2328 106 308 Acyl Lipid Metabolism Gene Families AT3G06650 32.243 1.68e-23 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2328 K01899 - gmx:100815484 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2328 2 27911820 27915440 Lja2g2328 2 27911820 27915440 ECH