Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00244 ATGGGTCGTCAAGCCATCGCCAAGCTTATTGGATCACTCGCATCTCGCAGAGGCACAAACTCATGGAATCAGAGTCGCCATTACACGTTGGCTCCGCCACCTCCTCCAGCTGTTTTTGTTGACAAGAACACCCGTGTTATTTGCCAAGGCATTACCGGCAAAAATGGAACCTTCCATACCGAACAAGCAATTGAATATGGAACCAATATGGTTGGTGGTGTGACACCAAAGAAGGGTGGAACTGAACATTTGGGGCTTCCCGTCTTTAACACTGTTGCTGAAGCAAAGGCTGAAACAAATGCTAATGCTTCAGTGATTTATGTTCCTCCCCCATTTGCTGCAGCTGCTATCATGGAGGCTTTGGAGGCTGAGTTAGATCTCGTAGTGTGTATTACGGAGGGAATTCCTCAGCACGATATGGTGAAAGCTAAAGCTGCTTTAAACAGGCAATCAAAAACTCGATTGATTGGACCAAACTGCCCTGGTATTATCAAGCCTGGGGAATGTAAAATTGGAATCATGCCTGGCTATATCCATAAACCTGGTCGCATAGGAATTGTTTCGCGATCTGGTACCTTGACCTATGAAGCGGTTTTCCAAACAACTGCTGTTGGCCTCGGACAATCTACTTGTGTTGGGATTGGTGGTGATCCTTTTAATGGAACAAACTTTATTGACTGTATTGAAAAATTTCTAGCGGACCCTCAGACAGAAGGTATTGTTTTGATTGGAGAGATCGGTGGAACTGCAGAGGAGGATGCTGCCACTCTAATAAAGGAAAGTGGAACTGAAAAACCTGTTGTTTCCTTCATTGCTGGACTAACAGCTCCCCCTGGCCGTAGGATGGGTCATGCTGGAGCTATTGTGTCGGGAGGGAAGGGCACTGCACAAGGCAAGATTCAGGCCCTCAAGGATGCTGGTGTCACGGTAGTACAGTCTCCAGCAAAAATTGGGGTAACCATGCTAGATATTTTCAAGCAGAGAGGCCTTGTTGAGTAG 999 0.4655 MGRQAIAKLIGSLASRRGTNSWNQSRHYTLAPPPPPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTNMVGGVTPKKGGTEHLGLPVFNTVAEAKAETNANASVIYVPPPFAAAAIMEALEAELDLVVCITEGIPQHDMVKAKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFIDCIEKFLADPQTEGIVLIGEIGGTAEEDAATLIKESGTEKPVVSFIAGLTAPPGRRMGHAGAIVSGGKGTAQGKIQALKDAGVTVVQSPAKIGVTMLDIFKQRGLVE* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00244 332 PANTHER SUCCINYL-COA LIGASE SUBUNIT ALPHA 34 330 - -
Pte16g00244 332 PIRSF SucCS_alpha 35 328 IPR005810 GO:0003824
Pte16g00244 332 PRINTS Succinyl-CoA synthase signature 213 231 - -
Pte16g00244 332 PRINTS Succinyl-CoA synthase signature 277 294 - -
Pte16g00244 332 PRINTS Succinyl-CoA synthase signature 244 257 - -
Pte16g00244 332 PRINTS Succinyl-CoA synthase signature 117 134 - -
Pte16g00244 332 SMART CoA_binding_2 39 135 IPR003781 -
Pte16g00244 332 FunFam Succinate--CoA ligase [ADP-forming] subunit alpha 36 156 - -
Pte16g00244 332 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 188 217 IPR033847 -
Pte16g00244 332 NCBIfam succinate--CoA ligase subunit alpha 39 324 IPR005810 GO:0003824
Pte16g00244 332 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 273 286 IPR017440 -
Pte16g00244 332 Pfam CoA binding domain 41 134 IPR003781 -
Pte16g00244 332 Gene3D - 37 156 - -
Pte16g00244 332 SUPERFAMILY Succinyl-CoA synthetase domains 159 323 IPR016102 -
Pte16g00244 332 Hamap Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 36 325 IPR005810 GO:0003824
Pte16g00244 332 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 37 158 IPR036291 -
Pte16g00244 332 Pfam CoA-ligase 187 308 IPR005811 GO:0003824
Pte16g00244 332 FunFam Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial 157 330 - -
Pte16g00244 332 Gene3D - 157 330 IPR016102 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00244 Pte-Chr16 2983229 2988501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00244 125 332 Acyl Lipid Metabolism Gene Families AT3G06650 34.703 1.96e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00244 K01899 - qsa:O6P43_008400 585.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g00244 16 2983229 2988501 Pte16g00244 16 2983229 2988501 RCT