Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0907 ATGGGAAGGCAAGCCATAACTAAGTTGATGGCTTCGATCGCGTCGCGCCGCCACTTCATCCGCCACTTCTCGGCGGCGACGCCGGCGGTGTTCGTCGACAAGAGCACTCGCGTCATCTGCCAAGGCATCACCGGCAAAAACGGCACCTTCCACACCGAACAAGCCATCGAATACGGCACCAACATGGTTGGTGGTGTGACTCCTAAGAAAGGTGGAACCGAACATTTAGGTCTTCCAGTTTTCAACACCGTTGCGGAAGCGAAGGCTGAAACCAAAGCCAATGCTTCCGTCATCTACGTTCCTCCGCCATTTGCTGCTGCCGCCATCATGGAGGCTATGGAGGCTGAATTGGATCTCGTTGTTTGCATCACTGAGGGAATTCCTCAGCATGATATGGTACGGGTTAAAGCGGCACTTAACAGGCAGTCCAAAACTCGGCTGATAGGACCAAACTGCCCTGGTATTATCAAGCCTGGGGAATGTAAAATTGGAATCATGCCGGGTTATATTCACAAACCTGGTCGCATAGGAATTGTTTCTCGTTCTGGTACCTTGACATATGAAGCGGTTTTCCAAACAACTGCTGTTGGCCTTGGACAATCCACTTGTGTGGGTATAGGAGGAGATCCCTTTAATGGAACAAATTTTGTTGATTGCCTTCAGAAGTTCCTGGCAGATCCTCAGACAGAAGGTATCATTCTTATAGGAGAGATAGGAGGTACTGCAGAAGAGGATGCTGCTGCACTAATTAAGGAAAGTGGGACTGAGAAACCTGTTGTTGCATTTATTGCTGGATTAACTGCTCCTCCTGGCCGTCGTATGGGTCATGCTGGAGCTATTGTGTCGGGTGGCAAAGGTACTGCACAAGACAAAATTAATACCCTCAGGGAAGCTGGGGTAACAGTTGTGGAGTCCCCTGCCAAAATTGGAGCTGCCATGCTTGATGTTTTCAAGCAGAGGGGCTTGGTGCAATAG 975 0.4974 MGRQAITKLMASIASRRHFIRHFSAATPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTNMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLQKFLADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKINTLREAGVTVVESPAKIGAAMLDVFKQRGLVQ* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0907 324 Gene3D - 149 322 IPR016102 -
Apr6g0907 324 PRINTS Succinyl-CoA synthase signature 109 126 - -
Apr6g0907 324 PRINTS Succinyl-CoA synthase signature 205 223 - -
Apr6g0907 324 PRINTS Succinyl-CoA synthase signature 236 249 - -
Apr6g0907 324 PRINTS Succinyl-CoA synthase signature 269 286 - -
Apr6g0907 324 PANTHER SUCCINYL-COA LIGASE SUBUNIT ALPHA 7 323 - -
Apr6g0907 324 Hamap Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 28 317 IPR005810 GO:0003824
Apr6g0907 324 Pfam CoA binding domain 33 126 IPR003781 -
Apr6g0907 324 SMART CoA_binding_2 31 127 IPR003781 -
Apr6g0907 324 TIGRFAM sucCoAalpha: succinate-CoA ligase, alpha subunit 31 316 IPR005810 GO:0003824
Apr6g0907 324 PANTHER SUCCINATE--COA LIGASE [ADP-FORMING] SUBUNIT ALPHA-1, MITOCHONDRIAL 7 323 - -
Apr6g0907 324 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 27 150 IPR036291 -
Apr6g0907 324 Gene3D - 29 148 - -
Apr6g0907 324 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 265 278 IPR017440 -
Apr6g0907 324 SUPERFAMILY Succinyl-CoA synthetase domains 151 319 IPR016102 -
Apr6g0907 324 Pfam CoA-ligase 179 300 IPR005811 GO:0003824
Apr6g0907 324 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 180 209 IPR033847 -
Apr6g0907 324 PIRSF SucCS_alpha 25 320 IPR005810 GO:0003824
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0907 117 319 Acyl Lipid Metabolism Gene Families AT3G06650 31.776 3.84e-22 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0907 K01899 - gmx:100815484 601.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0907 6 13491860 13495917 Apr6g0907 6 13491860 13495917 ECH