Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g1884 ATGATCGTGACCAGGGTGTATAGCCAGCAAGCGAAGAGCGTGAACCGGAGAACAGAGCAAAGAGCACAGCATATCAGGGTGGATCATGGTCGCCGAGCTGTAGTGAAGTTGATCAGCTCGATTGTATCACGTGCCGAATCATCTTCATCGCCGTCACTTCCTTCTTCTTCCACTCAGATCCGCCATTTCACGTCAGCGCCAACCTCTCCAGCCGTTTTCGTTGACAAGACCACACGCGTCATCTGCCAAGGCATCACCGGCAAGAATGGCACTTTCCACACTGAGCAAGCCATCGAATACGGAACCAAGATGGTGGGCGGTGTAACACCAAAGAAGGGTGGGACTGAACACCTGGGACTTCCTGTGTTTAACACTGTTGCTGAAGCAAAAGCTGAAACAAAGGCAAATGCTTCAGTCATATATGTTCCTCCACCATTTGCTGCTGCTGCCATTTTGGAGGCAGTGGAAGCTGAGTTGGATCTTGTTGTCTGTATCACTGAAGGGATTCCTCAGCATGATATGGTACGAGTGAAAGCTGCTCTTAATAGACAGTCTAAGACTCGTCTGATTGGACCAAACTGCCCTGGTATCATCAAGCCTGGTGAATGTAAAATTGGAATCATGCCAAGTTACATTCATAAACCTGGTTGTATAGGAATTGTTTCTCGTTCTGGCACCTTGACATATGAAGCGGTTTTCCAAACAAGTGTTGTTGGACTTGGACAATCCACTTGTGTGGGCATAGGTGGAGATCCTTTTAACGGAACGAACTTTGTTGATTGTGTGGAGCGATTCCTAGCAGATCCACAGACTAAAGGCATAGTTCTCATAGGAGAGATAGGGGGAACTGCTGAAGAAGATGCTGCTGCACTAATTAAGGAAAGTGGGACTCAGAAGCCTATCGTCGCATTTATTGCTGGATTAACAGCTCCCCCTGGCCGTCGCATGGGTCATGCTGGAGCCATTGTGTCAGGTGGCAAGGGCACTGCTCAGGACAAAATTAAGACTCTGAGGGAAGCTGGGGTCAGAGTAGTTGAGTCGCCTGCTAAAATTGGATCTGCCATTCTTGATTCTTGCTTGAGGACCTCGGTGGGATAG 1098 0.4845 MIVTRVYSQQAKSVNRRTEQRAQHIRVDHGRRAVVKLISSIVSRAESSSSPSLPSSSTQIRHFTSAPTSPAVFVDKTTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPFAAAAILEAVEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPSYIHKPGCIGIVSRSGTLTYEAVFQTSVVGLGQSTCVGIGGDPFNGTNFVDCVERFLADPQTKGIVLIGEIGGTAEEDAAALIKESGTQKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVRVVESPAKIGSAILDSCLRTSVG 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g1884 365 Pfam CoA binding domain 75 168 IPR003781 -
Prci14g1884 365 PRINTS Succinyl-CoA synthase signature 151 168 - -
Prci14g1884 365 PRINTS Succinyl-CoA synthase signature 311 328 - -
Prci14g1884 365 PRINTS Succinyl-CoA synthase signature 278 291 - -
Prci14g1884 365 PRINTS Succinyl-CoA synthase signature 247 265 - -
Prci14g1884 365 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 307 320 IPR017440 -
Prci14g1884 365 NCBIfam succinate--CoA ligase subunit alpha 73 356 IPR005810 GO:0003824
Prci14g1884 365 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 69 192 IPR036291 -
Prci14g1884 365 Gene3D - 71 190 - -
Prci14g1884 365 Hamap Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 70 359 IPR005810 GO:0003824
Prci14g1884 365 PANTHER SUCCINYL-COA LIGASE SUBUNIT ALPHA 55 358 - -
Prci14g1884 365 FunFam Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial 191 364 - -
Prci14g1884 365 Pfam CoA-ligase 221 342 IPR005811 GO:0003824
Prci14g1884 365 FunFam Succinate--CoA ligase [ADP-forming] subunit alpha 69 190 - -
Prci14g1884 365 SMART CoA_binding_2 73 169 IPR003781 -
Prci14g1884 365 Gene3D - 191 363 IPR016102 -
Prci14g1884 365 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 222 251 IPR033847 -
Prci14g1884 365 SUPERFAMILY Succinyl-CoA synthetase domains 193 355 IPR016102 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g1884 Prci-Chr14 26418534 26425693 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g1884 159 355 Acyl Lipid Metabolism Gene Families AT5G49460 34.135 9.55e-23 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g1884 K01899 - qsa:O6P43_008400 548.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci14g1884 14 26418534 26425693 Prci14g1884 14 26418534 26425693 ECH