Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0507 ATGGCACTTGCAACAAGTGCTGCATTGATCGCTTCTTCTGTTTATTGCGTTGCTCGCTGTGATCCCAACCTTCTTCATTTTTTGGGTTCACATCATGGCGATGCTGTTGGGAATTCTGGTTTTTTTGTTAGGTCTCACGCTGGGAAAAGTGATGTTGTGTTAGAAAGAAGAAGGTTGAAAACTATAGACACTCGCATTTTGGAAAATAATAATAATACAGAAATCAAGTCCACTTTTGAAATCCCAGTTTCTTGTTATCAGCTTATTGGTGTTCCTGACCGAGCGGAGAAAGATGAAATTGTCAAGGCAATTATGGGTTTGAAAAATGCAGAAATTGAAGAAGGTTACACCATGGATGTTGTTGCATCTCGTCAGGATCTTCTGATGGATGTTAGGGATAAGCTTCTTTTTGAGCCAGAATATGCTGGTGACTTGAGGGAAAAGATTCCCCCGAAATCCTCTCTTCGTATTCCTTGGTCTTCGTTACCTGGTGCTCTTTGCCTTCTTCAAGAGGTTGGAGAATCAAAGCTTGTGCTGGACATTGGTCGGGCAAGCCTTCAGCATGAAGATGCCAAGCCATATTCGGATGATTTGCTACTTGCTATGGCACTAGCTGAGTGTGCAATTGCGAAGATTGGCTTTGAGATGAAGAAAGTGTCTCAAGGTTTTGAAGCTCTTGCTCGTGCCCAGCATATCCTAAGAAGTAAACCATCTCTTGCAAAAATGACATTGCTATCTCAAATTGAAGAATCTCTTGAAGAGCTTGCGCCTGCTTGCACGTTGGAACTACTTAGCATGCCACACACCCCTGCAAATGCTGATAGAAGACGAGGAGCAATTTCGGCTTTGCGTGAATTGCTCAGACAGGGTCTTGACGTTGAAACTTCTTGCCATGTACAGGACTGGCCATCCTTTCTAAGCCAAGCATTTGACAATTTGCTGGCTAATGAGATAGTTGATCTTCTTCCTTGGGATAACTTGGCTGTTATGCGAAAGAATAAAAAGACAATTGAATCACAGAATCTAAGGATAGTAATTGATGCAAACTGTTTCTATAGAGTTTTTAAAGCTCATATGGCACTTGGGTTTTCCAGCAAGCAAATAGAGTTGATTAACAAAGCAAAAAGCATATGTGAATGTTTGATAGCTTCAGAGGGCATTGATCTGAAATTTGAGGAAGTTTTTTGCTTATTCCTTCTTGGACAGGGCACAGAGGCTGAGGTGGTTGAAAAACTTAAGCAGCTGGAGCTGAACTTAAACCCAAAAAATACTTCAGTCTTGGGGAAGGCAATAATAGACACTTCTACCGCAAACCCATCATTGGATATGTGGCTGAAGGATTCTTTGCTTGCTTTATTTCCAGATACTAAAGATTGTTCTCCATCTTTGGCCAATTTCTTCAATGCTCAAAAGAAATTTTCTGGAAGCAAGAAAACTAAAGGAGCTGCACAGACGTCGCCTCCTATATGTCATAGACCTCTATCCTTATCTGGTTCCTTAGACCGAGGAGATATTGCGGAACCTCGCTCTTACATGAGCTCTTCTCCAAATATAGGGTTTGCTGTCAAGCAACTGGCTCCTACTGATTTGCAGAGTTCACTGCTATCTGGCAGAAATGAAAAAGCAAATGATCTTTGTAAGTCACCTGTTCAAGTGAAAAGGAGCCTTGGCACTCAGCGCAATGGAATCTGGGATAGCCACTTCACTCATGCACAGATATTTGGAAAAATAACATACATTAGTGTGCTGGGTTGTATTGTGTTTGCTACAGTCAAGTTAATGGGAATCAACTTGAGCAGGACTCTTAATGGTTCTCATTGGGCTTTGACCAAAGCAAATAATAACACTGCTTGGACTGCAGAGTCTTCTGCTGACTACTCTGTAGGCCCTGCTTATATTAGGGGGGGAAACATTGCTGACATACTGAAGAAGATCCTGCCAATGGCCAAGACACCATTTTTGCACAAGTCGGGTACTAAAAAGCTTAGTGATTTACACGCTTCTCTTGCCTCATTATCGTCCCATATTAATGCTCACAGGAGGCCGATGCCTGTGAAAGAAGCAGAAATCCTTGTTAAGCAATGGCAAACAATCAAAGCTGAAGCTCTGGGACCTAGTCATGAAGTTAATTGCCTATCTGATGTCCTTGATGAATCCATGCTTGCTCAGTGGCAAAGTTTGGTTGATGCTGCAAAAGAAAAATCTTGTCACTGGAGATTTCTTTTGCTGAAATTATCTATCCTTCGAGCTGACATTCTATTAGATGGGAATGGAGTAGACATAGCAGAAATAGAAGCTCTCTTAGAGGAAGCAGCTGAACTTGTTGATGATTCTCAGAAAAGGAACCCAAACTACTATAGCACTTACAAAGTAAAGTATATCCTGAAGAGGCAAGAAGATGGTTCATGGAAGTTCTGTGAAGAACAAAAAAGGGGTATTGTTTCGCAGTGTCGAGCAATCAGCGTAGAATCGACTCACATAATGTCTCGTCAAGCCGTAACAAAATTGATCTCCTCCGTCGCATCGCGCCGCCACAACATCCGCCACTTCACGGCGGCGCCATCCTCTCCCGCGGTGTTCGTGGACAAGACGACTCGCGTGATCTGCCAAGGCATAACGGGAAAAAACGGCACCTTCCACACCGAACAAGCAATCGAATATGGAACCAACATGGTTGGTGGTGTGACTCCGAAGAAGGGTGGAACTGAACATTTAGGGCTTCCTGTATATAACAGTGTTGCTGAAGCTAAGTCTGAAACTAAGGCAAATGCTTCTGTTATCTATGTTCCTCCACCTTTTGCTGCTGCTGCTATTTTGGAGGCTTTGGAGGCTGAATTGGATCTTATTGTTTGCATCACTGAAGGAATTCCCCAGCATGACATGGTACGAGTTAAAGCTGCAATTAACAGCCAGTCCAAGACTCGTCTGATAGGACCAAACTGCCCTGGTATTATCAAGCCTGGGGAATGTAAAATTGGAATCATGCCAGGTTACATTCATAAACCTGGACGTATAGGAATTGTTTCCCGTTCTGGTACCTTGACATATGAAGCGGTTTTTCAAACGACTGCTGTTGGCCTTGGACAATCCACTTGTGTTGGTATAGGAGGAGATCCCTTTAATGGAACAAACTTTGTTGATTGTCTTGAGAAGTTCCTAGTAGATCCACAGACAGAAGGTATCATTCTCATAGGAGAGATAGGAGGAACTGCAGAAGAGGATGCTGCTCAACTAATTAAGGATAGTGGGACTGAGAAGCCTGTTGTTGCCTTTATTGCTGGATTAACTGCTCCACCTGGCCGTCGTATGGGTCATGCTGGAGCTATTGTATCAGGTGGCAAGGGTACTGCACAAGACAAAATCAAAACTCTCAGGGAAGCTGGGGTCACAGTTGTGGAGTCACCTGCTAAAATTGGAGCTGCCATGCTAGATGTTTTCAAGCAGAGGGGCTTGGTGGAATAG 3462 0.4324 MALATSAALIASSVYCVARCDPNLLHFLGSHHGDAVGNSGFFVRSHAGKSDVVLERRRLKTIDTRILENNNNTEIKSTFEIPVSCYQLIGVPDRAEKDEIVKAIMGLKNAEIEEGYTMDVVASRQDLLMDVRDKLLFEPEYAGDLREKIPPKSSLRIPWSSLPGALCLLQEVGESKLVLDIGRASLQHEDAKPYSDDLLLAMALAECAIAKIGFEMKKVSQGFEALARAQHILRSKPSLAKMTLLSQIEESLEELAPACTLELLSMPHTPANADRRRGAISALRELLRQGLDVETSCHVQDWPSFLSQAFDNLLANEIVDLLPWDNLAVMRKNKKTIESQNLRIVIDANCFYRVFKAHMALGFSSKQIELINKAKSICECLIASEGIDLKFEEVFCLFLLGQGTEAEVVEKLKQLELNLNPKNTSVLGKAIIDTSTANPSLDMWLKDSLLALFPDTKDCSPSLANFFNAQKKFSGSKKTKGAAQTSPPICHRPLSLSGSLDRGDIAEPRSYMSSSPNIGFAVKQLAPTDLQSSLLSGRNEKANDLCKSPVQVKRSLGTQRNGIWDSHFTHAQIFGKITYISVLGCIVFATVKLMGINLSRTLNGSHWALTKANNNTAWTAESSADYSVGPAYIRGGNIADILKKILPMAKTPFLHKSGTKKLSDLHASLASLSSHINAHRRPMPVKEAEILVKQWQTIKAEALGPSHEVNCLSDVLDESMLAQWQSLVDAAKEKSCHWRFLLLKLSILRADILLDGNGVDIAEIEALLEEAAELVDDSQKRNPNYYSTYKVKYILKRQEDGSWKFCEEQKRGIVSQCRAISVESTHIMSRQAVTKLISSVASRRHNIRHFTAAPSSPAVFVDKTTRVICQGITGKNGTFHTEQAIEYGTNMVGGVTPKKGGTEHLGLPVYNSVAEAKSETKANASVIYVPPPFAAAAILEALEAELDLIVCITEGIPQHDMVRVKAAINSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTEGIILIGEIGGTAEEDAAQLIKDSGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLDVFKQRGLVE 1153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0507 1153 Coils Coil 761 781 - -
Lal8g0507 1153 Hamap Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 857 1146 IPR005810 GO:0003824
Lal8g0507 1153 Gene3D - 978 1151 IPR016102 -
Lal8g0507 1153 TIGRFAM sucCoAalpha: succinate-CoA ligase, alpha subunit 860 1145 IPR005810 GO:0003824
Lal8g0507 1153 PRINTS Succinyl-CoA synthase signature 938 955 - -
Lal8g0507 1153 PRINTS Succinyl-CoA synthase signature 1034 1052 - -
Lal8g0507 1153 PRINTS Succinyl-CoA synthase signature 1065 1078 - -
Lal8g0507 1153 PRINTS Succinyl-CoA synthase signature 1098 1115 - -
Lal8g0507 1153 Pfam CoA-ligase 1008 1129 IPR005811 GO:0003824
Lal8g0507 1153 PANTHER PLASTID DIVISION PROTEIN CDP1, CHLOROPLASTIC-RELATED 72 809 IPR044685 -
Lal8g0507 1153 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 857 979 IPR036291 -
Lal8g0507 1153 Pfam ARC6-like, IMS domain 688 805 IPR025344 -
Lal8g0507 1153 Pfam CoA binding domain 862 955 IPR003781 -
Lal8g0507 1153 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 1094 1107 IPR017440 -
Lal8g0507 1153 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 1009 1038 IPR033847 -
Lal8g0507 1153 SUPERFAMILY Succinyl-CoA synthetase domains 980 1148 IPR016102 -
Lal8g0507 1153 SMART CoA_binding_2 860 956 IPR003781 -
Lal8g0507 1153 Gene3D - 858 977 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0507 Lal-Chr8 3466639 3484480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0507 946 1153 Acyl Lipid Metabolism Gene Families AT3G06650 31.963 3.60e-21 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0507 - - gmx:100818147 1187.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0507 8 3466639 3484480 Lal8g0507 8 3466639 3484480 ECH
Lal8g0507 8 3466639 3484480 Lal10g0910 10 16533738 16538453 LSH