Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03760 ATGGAAAGGGAAAACTGGAACGAGAATAACGACAATGGTTGTTATCAGAATCAATTGTTGTGTGATAATGATCGGGATTCAGTTATGATGAATTCTTCCATGTCTTCGTCTCCTCCGAAGCTTGGATATATTGAACATCATGTGTCCAAATTCGATACGTTGGTTGGGATTGCAATCAAATACGGTGTTGAGGTTACAGATATTAAAAGAATGAATAGCCTTGTTACAGACCATCAGATATTTGCGCTTAAAACAGTTCAAATTCCATTACCCGGAAGGCACCCTCCGTCTCCTTGTTTATCAAATGATTCCAGTACTCCTGGCCCACCAATTAATGCGCAACGTGAACTGCTTGAATCATTCCAGTCTGTAAGATTTAAGTGTCCTGACCGGAAGGTCTCTCCAGCAATGAGCTCATTACAGGGTTATTATGGACTTCAAGTTCTCCCTAACTCCTCAGAAAACGGTTCATCATCCAAGAACACGCCTATGTCAGACCGACCCCTTAGTCGTCACCGAAAATCCAAAAGCTTAGTCAATGTTATTTTGGAAGAGATTATGGAAAAGGATGGTACAGCACCAGCTGGAGAAACCTGGGAACTTAACTCTGATAAATGGAATGACAAATTTGCACAGAGACGTCAGAAATCTGTAGCTGACTTTACCAGGATACCGGAGTTGATTCTGAGGGAGGATGTTGGCAGCAGTGGCGGTCTTCCTTCAAGAACAGGAAAGGGTTTAGCTCTGAGACAGAAAGCAGCCAGCCGAACTGCAGTGACGAATGATTCTGAATCAAACGGTTTTACACCTGTGCCAATGGTTACGGGGGATGGTTTACAAACTGATAGTTCATCTGGGGTGAGGAAATCGTCCAGTACATCTTGTTTGCAAGAGCAGGAAAACAGCTGCTCCTCATCCATTTGGCCATCCTCAATGTGGAATTTGAAACCAGATTTACAGGCCCTTTCGACTGCAGCTATTGGAAAACCGATCTTTGATGGCTTGCCAAAGCCATTAACCGGGCGAAGGAATAAAGCTGCACTTGATTAA 1050 0.4352 MERENWNENNDNGCYQNQLLCDNDRDSVMMNSSMSSSPPKLGYIEHHVSKFDTLVGIAIKYGVEVTDIKRMNSLVTDHQIFALKTVQIPLPGRHPPSPCLSNDSSTPGPPINAQRELLESFQSVRFKCPDRKVSPAMSSLQGYYGLQVLPNSSENGSSSKNTPMSDRPLSRHRKSKSLVNVILEEIMEKDGTAPAGETWELNSDKWNDKFAQRRQKSVADFTRIPELILREDVGSSGGLPSRTGKGLALRQKAASRTAVTNDSESNGFTPVPMVTGDGLQTDSSSGVRKSSSTSCLQEQENSCSSSIWPSSMWNLKPDLQALSTAAIGKPIFDGLPKPLTGRRNKAALD 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03760 349 PANTHER LYSM AND PUTATIVE PEPTIDOGLYCAN-BINDING DOMAIN-CONTAINING PROTEIN 30 272 IPR045030 -
Vifa3g03760 349 CDD LysM 52 88 IPR018392 -
Vifa3g03760 349 MobiDBLite consensus disorder prediction 254 296 - -
Vifa3g03760 349 MobiDBLite consensus disorder prediction 150 165 - -
Vifa3g03760 349 Pfam LysM domain 46 89 IPR018392 -
Vifa3g03760 349 Gene3D LysM domain 30 95 IPR036779 -
Vifa3g03760 349 MobiDBLite consensus disorder prediction 92 112 - -
Vifa3g03760 349 MobiDBLite consensus disorder prediction 150 173 - -
Vifa3g03760 349 MobiDBLite consensus disorder prediction 98 112 - -
Vifa3g03760 349 SUPERFAMILY LysM domain 44 89 IPR036779 -
Vifa3g03760 349 ProSiteProfiles LysM domain profile. 44 88 IPR018392 -
Vifa3g03760 349 SMART LysM_2 45 89 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03760 Vifa-Chr3 1101265402 1101267844 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03760 - - gmx:100786352 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03760 3 1101265402 1101267844 Vifa3g03760 3 1101265402 1101267844 ECH