Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g3157 ATGGGTCGCCGATTCGTAACCAAGTTGATGAGCTCGATTGCATCACACACCAAATCATCTTCTTCTTCTTCCTCTTCCTCCTCTCAGATCCGCCATTTCACGTCTGCGCCACCTTCTCCGGCCGTTTTCGTTGACAAGACCACGCGCGTTATCTGCCAAGGCATCACCGGAAAGAATGGCACTTTCCATACCGAGCAAGCCATCGAATACGGAACCAAGATGGTGGGTGGTGTAACACCAAAGAAGGGTGGAACTGAACACTTAGGACTTCCTGTGTTTAACTCTGTTGCTGAAGCAAAAGCTGAAACAAAGGCAAATGCTTCAGCCATCTATGTTCCTCCACCATTTGCTGCAGCTGCCATTATGGAGGCAGTGGAAGCTGAGTTGGATCTTGTTGTCTGTATCACAGAAGGGATTCCTCAGCATGACATGGTACGAGTGAAGGCAGCTCTTAATAGGCAGTCCAAGACTCGTCTGATTGGACCAAACTGCCCTGGTATCATCAAGCCTGGTGAATGTAAAATTGGAATAATGCCAGGTTACATCCATAAACCTGGTCGTGTAGGAATTGTTTCTCGTTCTGGCACCTTGACATATGAAGCGGTTTTCCAAACGACTGCTGTTGGACTTGGACAATCCACTTGTGTGGGCATAGGTGGAGATCCTTTTAATGGAACAAACTTTGTTGATTGTGTGGAACGGTTCCTGGTAGATCCACAGACTGAAGGTATCATTCTCATAGGAGAGATAGGGGGGACTGCGGAAGAAGATGCTGCTGCACTAATCAAGGAAAGTGGGACTGAGAAGCCTATAGTTGCATTTATCGCGGGATTAACGGCTCCCCCTGGCCGTCGTATGGGTCATGCTGGAGCCATTGTGTCAGGTGGCAAGGGCACTGCTCAGGACAAAATTAAGACTCTGAGGGAAGCTGGGGTCACTGTGGTGGAATCGCCTGCTAAAATTGGAGCTGCCATTTTTGATGTTTTCAAGCAGAGAGGCTTGGTGCAATAG 1011 0.4847 MGRRFVTKLMSSIASHTKSSSSSSSSSSQIRHFTSAPPSPAVFVDKTTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASAIYVPPPFAAAAIMEAVEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVERFLVDPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAIFDVFKQRGLVQ 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g3157 336 Gene3D - 41 160 - -
Mibi01g3157 336 TIGRFAM sucCoAalpha: succinate-CoA ligase, alpha subunit 43 328 IPR005810 GO:0003824
Mibi01g3157 336 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 277 290 IPR017440 -
Mibi01g3157 336 PRINTS Succinyl-CoA synthase signature 248 261 - -
Mibi01g3157 336 PRINTS Succinyl-CoA synthase signature 217 235 - -
Mibi01g3157 336 PRINTS Succinyl-CoA synthase signature 121 138 - -
Mibi01g3157 336 PRINTS Succinyl-CoA synthase signature 281 298 - -
Mibi01g3157 336 MobiDBLite consensus disorder prediction 16 35 - -
Mibi01g3157 336 Pfam CoA binding domain 45 138 IPR003781 -
Mibi01g3157 336 SMART CoA_binding_2 43 139 IPR003781 -
Mibi01g3157 336 FunFam Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial 161 334 - -
Mibi01g3157 336 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 41 162 IPR036291 -
Mibi01g3157 336 PIRSF SucCS_alpha 39 332 IPR005810 GO:0003824
Mibi01g3157 336 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 192 221 IPR033847 -
Mibi01g3157 336 Hamap Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 40 329 IPR005810 GO:0003824
Mibi01g3157 336 MobiDBLite consensus disorder prediction 16 36 - -
Mibi01g3157 336 SUPERFAMILY Succinyl-CoA synthetase domains 163 330 IPR016102 -
Mibi01g3157 336 Pfam CoA-ligase 191 312 IPR005811 GO:0003824
Mibi01g3157 336 PANTHER SUCCINYL-COA LIGASE SUBUNIT ALPHA 25 334 - -
Mibi01g3157 336 FunFam Succinate--CoA ligase [ADP-forming] subunit alpha 39 160 - -
Mibi01g3157 336 Gene3D - 161 334 IPR016102 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g3157 Mibi-ChrMibi01 55555021 55561431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g3157 129 331 Acyl Lipid Metabolism Gene Families AT3G06650 32.710 1.17e-22 97.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi01g3157 01 55555021 55561431 Mibi01g3157 01 55555021 55561431 ECH