Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01762 ATGAGAAGACAAGCCGTCACCAGATTGCTGTCCTCCATCGCCTCGCGCCGCCATGGCCTCCGCCAATTCTCGTCGGCCACGCCGGCTGTCTTCGTCGACAAGAGCACACGCGTGATCTGCCAAGGCATCACCGGCAAAAACGGCACCTTTCACACCGAACAAGCCATCGAATACGGCACCAACATGGTTGGTGGTGTGACTCCTAAGAAGGGTGGAACCGAACACCTGGGCCTTCCCGTCTTCAACACTGTCGCTGAAGCCAAGGCGGAAACCAAGGCCAACGCCTCCGTCATCTACGTTCCTCCGCCGTTTGCTGCCGCCGCCATCATGGAAGCCATGGAGGCTGAGCTGGATCTTGTCGTCTGCATCACCGAGGGCATTCCTCAGCACGACATGGTACGAGTTAAGGCAGCACTTAATAGGCAGTCCAAGACTCGTCTGATAGGACCAAACTGCCCTGGTATTATCAAGCCTGGGGAATGTAAAATTGGAATCATGCCAGGATATATTCACAAGCCCGGTCGCATAGGAATTGTCTCTCGTTCTGGTACCTTGACATATGAAGCAGGAGAGACTATTTCTTTTATTGCAACAGTGTGGGACTATGCTGTGTGTATGGTTTTCCAAACAACTGCTGTTGGCCTTGGACAATCCACTTGTGTGGGTATAGGAGGAGACCCCTTTAATGGAACAAACTTTGTTGACTGCCTTAAGAAGTTTCTAGCTGATCCTCAAACAGAAGGTATCATTCTTATAGGAGAGATAGGAGGAACTGCGGAAGAGGATGCTGCCGCACTAATTAAGGAAAGCGGCACTGAGAAGCCTGTTGTTGCATTTATTGCTGGTTTGACTGCCCCTCCTGGCCGTCGAATGGGTCATGCTGGAGGTTCTATTGGGTTAATTCCAGCTTTCAAGAAAAGGACCCCTTGGTACTTAGGTTTGCTTGAGGAAGGCTTAAAGGAATACTCTGTGATGAGAGTGGGAGGGGAAGGTAAGGAGTATGTAGTGGAAGCTATTGTGTCGGGCGGCAAGGGCACTGCACAAGACAAAATTAGAACCCTCAGGGAAGCTGGGGTGACAGTGGTGGAATCCCCCGCCAAAATTGGAGCTGCCATGCTAGACGTTTTCAAGCAGAGGGGCTTGGTGCAATAG 1152 0.5139 MRRQAVTRLLSSIASRRHGLRQFSSATPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTNMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAGETISFIATVWDYAVCMVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLKKFLADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGGSIGLIPAFKKRTPWYLGLLEEGLKEYSVMRVGGEGKEYVVEAIVSGGKGTAQDKIRTLREAGVTVVESPAKIGAAMLDVFKQRGLVQ 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01762 383 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 282 295 IPR017440 -
Vimu8g01762 383 FunFam Succinate--CoA ligase [ADP-forming] subunit alpha 27 148 - -
Vimu8g01762 383 Pfam CoA binding domain 33 126 IPR003781 -
Vimu8g01762 383 PANTHER SUCCINYL-COA LIGASE SUBUNIT ALPHA 15 381 - -
Vimu8g01762 383 SMART CoA_binding_2 31 127 IPR003781 -
Vimu8g01762 383 PRINTS Succinyl-CoA synthase signature 222 240 - -
Vimu8g01762 383 PRINTS Succinyl-CoA synthase signature 109 126 - -
Vimu8g01762 383 PRINTS Succinyl-CoA synthase signature 253 266 - -
Vimu8g01762 383 PRINTS Succinyl-CoA synthase signature 286 303 - -
Vimu8g01762 383 Gene3D - 29 148 - -
Vimu8g01762 383 Pfam CoA-ligase 179 295 IPR005811 GO:0003824
Vimu8g01762 383 NCBIfam succinate--CoA ligase subunit alpha 31 298 IPR005810 GO:0003824
Vimu8g01762 383 Hamap Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 28 376 IPR005810 GO:0003824
Vimu8g01762 383 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 27 150 IPR036291 -
Vimu8g01762 383 Gene3D - 149 381 IPR016102 -
Vimu8g01762 383 SUPERFAMILY Succinyl-CoA synthetase domains 151 299 IPR016102 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01762 117 299 Acyl Lipid Metabolism Gene Families AT5G49460 31.443 5.95e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01762 K01899 - gmx:100782001 570.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01762 8 23518706 23522845 Vimu8g01762 8 23518706 23522845 ECH