Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00402 ATGTCGCCGTCAAACGGGTTGCACAAcggcggcggcggcggcggTAATGGGGCGAGTTATATAGAGCATCAGGTTTCAAAACTTGACACTCTTGCTGGTGTTGCAATCAAGTATGGTGTTGAGGTAGCTGACATTAAAAGGATGAATGGGCTAGCCACAGATCTTCAAATGTTTGCACTGAAGACATTGAAAATTCCATTACCAGGACGGCATCCACCATCTCCTGCTCCTGGTCCACATGATGAACCTGCCAAGTCAGGAGATAGTAGCATTGAAAGGAAACCCCTACGTATAGGTCAATCTGCCATGAAGGAACCTCTCGagtccttaagactgaaaccacctcaaccgaatatttctccagctatgagcattttacagaaattctatggcctcaaatcttcaaattcaagagatacattaaacggaacagaaatggcagtttatacatctgcaagttcagatcattctagaggcgaatggcttcccaaaacttcacctatttcagacctaccaTCAGCATCAAATGATTACCCCAAATCAACCAATTTAGTGTTTGATCTACTGACTGGGGATGATGTGCATGAGTATGTGCCTCTTGCAGAAATTGGTGATGGGGGAGCTGAGAAGTCTGATGAGAAATCTGTCCGCAGACGTCAGAAAGAAGGAAATGGTAATGGTTCAAATGGTTTTTCTTCAAGTGGAAAGACACTAGCCATGAGGCCGAAATCGGCTAGTCGAGCAGCGCTGCTTCCTGAGTCAGAATCAGGATGGTTAGATTCAATTCCAGTGGGGTTGGGAGAATCTATATTTACCGATGGCTTTTCTGGAGTGCGCAAATCGTCGAGTGCATCGAGCCTTAGAGAGCAGGAAAAGAACAATTCAGCAACAGCCTGGCCACCTGCAATATGGAACTTGAAACCAGACTTGCAAGCAGCCATTGGGAAACCTATCTTTGATGGTTTGCCTATCCCAATAACAGGCCGCAGAAGCAAAGCTGCCCTTGATTAG 1011 0.364 MSPSNGLHNGGGGGGNGASYIEHQVSKLDTLAGVAIKYGVEVADIKRMNGLATDLQMFALKTLKIPLPGRHPPSPAPGPHDEPAKSGDSSIERKPLRIGQSAMKEPLESLRLKPPQPNISPAMSILQKFYGLKSSNSRDTLNGTEMAVYTSASSDHSRGEWLPKTSPISDLPSASNDYPKSTNLVFDLLTGDDVHEYVPLAEIGDGGAEKSDEKSVRRRQKEGNGNGSNGFSSSGKTLAMRPKSASRAALLPESESGWLDSIPVGLGESIFTDGFSGVRKSSSASSLREQEKNNSATAWPPAIWNLKPDLQAAIGKPIFDGLPIPITGRRSKAALD 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00402 336 MobiDBLite consensus disorder prediction 222 240 - -
Cca08g00402 336 MobiDBLite consensus disorder prediction 66 92 - -
Cca08g00402 336 SUPERFAMILY LysM domain 21 66 IPR036779 -
Cca08g00402 336 MobiDBLite consensus disorder prediction 200 247 - -
Cca08g00402 336 MobiDBLite consensus disorder prediction 206 221 - -
Cca08g00402 336 Gene3D LysM domain 16 72 IPR036779 -
Cca08g00402 336 MobiDBLite consensus disorder prediction 151 178 - -
Cca08g00402 336 PANTHER LOC443603 PROTEIN-RELATED 3 336 IPR045030 -
Cca08g00402 336 CDD LysM 21 65 IPR018392 -
Cca08g00402 336 PANTHER OS06G0729900 PROTEIN 3 336 - -
Cca08g00402 336 SMART LysM_2 22 66 IPR018392 -
Cca08g00402 336 ProSiteProfiles LysM domain profile. 21 65 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00402 Cca-Chr8 6121205 6124566 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00402 - - gmx:100786430 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00402 08 6121205 6124566 Cca08g00402 08 6121205 6124566 ECH