Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0516 ATGTCACCGTCGAATGAGGTTCAGAATAACGGTGGCGGTGGCAATGGGTTGAATTATATTGAGCATCAGGTTTCAAAATTTGACACTCTTGCTGGTGTTGCCATTAAGTATGGTGTTGAGGTAGCAGATATCAAAAGGATGAATGGGTTAGCCTCAGATCTTCAAATGTTTGCCCTGAAAACATTGAGAATTCCGTTACCAGGACGACATCCACCATCTCCAATACCCAGTTTGCCTAACGGACATGCCAAACAAGGCTTTGAAAGGAGATCCCCACCCAGAAGTAAAGCTGGCATGAAGGAACCTCTTCGGTCCTTAAGACTAAAAGCACTCGAAGAGGAGATTTCTCCAGCTATGACCATTTTACGGAAATACTATGGACTCAAATCCTCAAAGTCTAGAGATACATTTGAAGGAACAGAAATGGAAGCATATATATCCGCAAGTTCAGATCATTCCCGAGATAAACGGCTTCCGAAAGCCTCACCAATTTCAGACACTCCATCAGATCACTACCCCAAGTCGTCAAACCCAGTGTACGATCTACTGACTGGGAATGATGAAGTGCCTGGGTATGTGCCTTTTTCAGAAATTGGTGATGCGGGAGGTGAGAAGTCGGATGAGAAATCTGTCCGCAGACGTCAGAAGGCTGATATTGATAGTGAAGGTGGTACACCTGAAAGAATCTCAAAAGAAGGAAATAGTGGTGGTTCAAATGGCTTTTCATCAACTGGAAAACCATTATCCGGGAGGACAAAATCGGCTAGTCGAGCAGTGCTGTTTCCTGAGTCAGAATCATGGTTAGACTCTATTGCAGTGGGGTTGGGAGATTCTATACTGACCGACAGGTTTTCTGGAGTGCGCAAATCATCAAGTGCATCGAGCCTAAGGGAGCAGGAGAAGAACAATTCAGCAGCAACAGTGTGGCCACCAAGATGGAGTTTGAAACCAGATTTGCAAGCAGCCATTGATGGCTTACCTATCCCAATAACTTGCCGCAGGGGCAAAACCGCTCTTGATTAG 1023 0.4526 MSPSNEVQNNGGGGNGLNYIEHQVSKFDTLAGVAIKYGVEVADIKRMNGLASDLQMFALKTLRIPLPGRHPPSPIPSLPNGHAKQGFERRSPPRSKAGMKEPLRSLRLKALEEEISPAMTILRKYYGLKSSKSRDTFEGTEMEAYISASSDHSRDKRLPKASPISDTPSDHYPKSSNPVYDLLTGNDEVPGYVPFSEIGDAGGEKSDEKSVRRRQKADIDSEGGTPERISKEGNSGGSNGFSSTGKPLSGRTKSASRAVLFPESESWLDSIAVGLGDSILTDRFSGVRKSSSASSLREQEKNNSAATVWPPRWSLKPDLQAAIDGLPIPITCRRGKTALD 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0516 340 SMART LysM_2 21 65 IPR018392 -
Lal25g0516 340 MobiDBLite consensus disorder prediction 201 227 - -
Lal25g0516 340 MobiDBLite consensus disorder prediction 68 101 - -
Lal25g0516 340 CDD LysM 20 64 IPR018392 -
Lal25g0516 340 SUPERFAMILY LysM domain 20 65 IPR036779 -
Lal25g0516 340 Gene3D LysM domain 14 71 IPR036779 -
Lal25g0516 340 MobiDBLite consensus disorder prediction 168 182 - -
Lal25g0516 340 MobiDBLite consensus disorder prediction 289 309 - -
Lal25g0516 340 Pfam LysM domain 22 65 IPR018392 -
Lal25g0516 340 PANTHER PEPTIDOGLYCAN-BINDING LYSM DOMAIN-CONTAINING PROTEIN 12 340 - -
Lal25g0516 340 MobiDBLite consensus disorder prediction 147 252 - -
Lal25g0516 340 MobiDBLite consensus disorder prediction 87 101 - -
Lal25g0516 340 ProSiteProfiles LysM domain profile. 20 64 IPR018392 -
Lal25g0516 340 PANTHER LOC443603 PROTEIN-RELATED 12 340 IPR045030 -
Lal25g0516 340 MobiDBLite consensus disorder prediction 231 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0516 Lal-Chr25 3680588 3683808 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0516 - - aip:107644597 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0516 25 3680588 3683808 Lal25g0516 25 3680588 3683808 ECH
Lal8g0506 8 3462959 3466229 Lal25g0516 25 3680588 3683808 LSH
Lal25g0516 25 3680588 3683808 Lal10g0912 10 16542889 16548998 LSH