Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05202 ATGGAAAAGGAAAGGTGGAAAGAGCATAGCAATGGGTATTACGATCAGTTTTTGTCTGATTATGATCGAGAAGTACCCAGTAGAGAACGTAGCCCTACGATGTCTTCTTCAGTGTCTTCATCTCCTCCTAGAAATGGCTACATCGAGCACCATATTTCCAAATTGGACACTTTGGCTGGCATCGCAATCAAGTATGGCGTTGAGGTAGTTGCAGATATAAAAAAGATGAATAGCCTTGTTACAGACCATCAGATGTTTGCACTTAAAACTCTCCACATTCCATTACCTGGAAGGCACCCTCCTTCTCCTTGTTTATCAAATGGTTCATGTACTCCAGGACATGGTAACAATGATCACAGTCCATCTGATCATGCACACCGTGAACTGCTCGAATCATTCCAGTCCCTGGGAATGAAGTCTTCTGAGCGAAAGGTCTCCCCAGCCATGAGCTCATTACAGGGTTACTATGGACTTAAAGTGAACTCTAGTCCCTCAGAAAATGGTTCACTCCCCAGGAACTCACTTGTGTCTGACCGACCCCTGAGTCGTCACAGGAAATCCAGAAGTTTGGTCAATGTAATTTTGGAAGAGATTATGGAAAAGTCTGATATTTCACCAGAGGCAGAATCCCGGGAAGGTAGCTCTGGTAAATGGAAGAGGCGTCAGAAATCTGAAGCTGACTTTTCCAGGATACCAGAGTTGCTTTTGAGGGAGGATAATAGCAGCAATGGTGGTCTTCCATCAAGAACAGGAAAGGGCTTAGCTCTAAGACAGAAAGCAGCTAGCAGAACTGCAGTGGCAACTGATTCTGAATCAAGTGGTTTGAATCCTGTGCCAAATGGTTTAGGGGATGCTTTTCTGACTGATGGTTCATCTGGTGTGAAGAAATCATCTAGTACATCTTGTTTACAAGATCAAGATAACAGTTGCTCTTCCTCATCCATTTGGCCAACCTCAATGTGGAGTTTGAAACCAGATTTACAGGCCCTTTCAACTGCAGCCATTGGAAAACCAATCTTTGATGGCTTGCCTAAGCCAATTACTGGTAGAAAAAATAAAGCTGCACTTGATTAA 1074 0.4358 MEKERWKEHSNGYYDQFLSDYDREVPSRERSPTMSSSVSSSPPRNGYIEHHISKLDTLAGIAIKYGVEVVADIKKMNSLVTDHQMFALKTLHIPLPGRHPPSPCLSNGSCTPGHGNNDHSPSDHAHRELLESFQSLGMKSSERKVSPAMSSLQGYYGLKVNSSPSENGSLPRNSLVSDRPLSRHRKSRSLVNVILEEIMEKSDISPEAESREGSSGKWKRRQKSEADFSRIPELLLREDNSSNGGLPSRTGKGLALRQKAASRTAVATDSESSGLNPVPNGLGDAFLTDGSSGVKKSSSTSCLQDQDNSCSSSSIWPTSMWSLKPDLQALSTAAIGKPIFDGLPKPITGRKNKAALD. 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05202 357 MobiDBLite consensus disorder prediction 18 45 - -
Seca10g05202 357 Gene3D LysM domain 34 100 IPR036779 -
Seca10g05202 357 MobiDBLite consensus disorder prediction 104 124 - -
Seca10g05202 357 ProSiteProfiles LysM domain profile. 48 93 IPR018392 -
Seca10g05202 357 PANTHER LYSM AND PUTATIVE PEPTIDOGLYCAN-BINDING DOMAIN-CONTAINING PROTEIN 21 280 IPR045030 -
Seca10g05202 357 MobiDBLite consensus disorder prediction 161 183 - -
Seca10g05202 357 MobiDBLite consensus disorder prediction 202 234 - -
Seca10g05202 357 CDD LysM 56 93 IPR018392 -
Seca10g05202 357 MobiDBLite consensus disorder prediction 30 45 - -
Seca10g05202 357 SMART LysM_2 49 94 IPR018392 -
Seca10g05202 357 MobiDBLite consensus disorder prediction 202 284 - -
Seca10g05202 357 MobiDBLite consensus disorder prediction 104 118 - -
Seca10g05202 357 MobiDBLite consensus disorder prediction 161 176 - -
Seca10g05202 357 MobiDBLite consensus disorder prediction 263 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05202 Seca-Chr10 119031024 119035323 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05202 - - pvu:PHAVU_003G005400g 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g05202 10 119031024 119035323 Seca10g05202 10 119031024 119035323 ECH