Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02946 ATGGGAAGACAAGCAGTAACTAGATTGCTGTCCTCGATCGCCTCGCACCGCCATGGACTCCGACAATTCTCGGCGGCCACGCCTGCGGTGTTCGTCGACAAGAGCACTCGTGTGATCTGTCAAGGCATCACCGGCAAGAACGGCACCTTCCACACTGAACAAGCCATCGAATACGGCACCAACATGGTTGGTGGTGTGACTCCTAAGAAGGGTGGAACCGAACACTTGGGCCTTCCCGTCTTCAACACCGTCGCTGAAGCCAAGGCGGAAACCAAGGCCAACGCCTCCGTCATCTACGTTCCTCCACCGTTCGCTGCCGCCGCCATCATGGAAGCCATGGAGGCTGAGCTGGATCTCGTCGTCTGCATCACCGAGGGCATTCCTCAGCATGACATGGTGCGGGTTAAGGCAGCACTTAACAGGCAGTCCAAGACTCGTCTGATAGGACCAAACTGCCCTGGTATTATCAAGCCCGGGGAATGTAAAATTGGAATCATGCCAGGATATATTCATAAGCCTGGTCGCATTGGAATTGTCTCTCGTTCTGGCACCTTGACATATGAAGCGGTTTTCCAAACAACTGCTGTTGGCCTCGGACAATCCACTTGTGTGGGTATTGGAGGAGATCCCTTTAATGGGACAAACTTTGTTGACTGCCTTAGGAAGTTCCTAGCTGATCCTCAAACAGAAGGTATCATTCTTATAGGAGAGATAGGAGGAACTGCAGAAGAGGATGCTGCTGCACTAATTAAGGAAAGCGGGACTGAGAAGCCTATCGTTGCATTTATTGCTGGTTTGACTGCCCCCCCTGGCCGTCGAATGGGTCATGCTGGAGCTATTGTTTCGGGCGGCAAGGGCACTGCACAAGACAAAATTAGAACCCTCAGGGAAGCTGGGGTGACAGTTGTGGAGTCCCCTGCCAAAATTGGAGCTGCCATGCTAGATGTTTTCAAGAAGAAGGGTTTGGTGCAATACAGAGTTTGGAATCTCCACTATCCAAATCCCATTCCTTCTCCTTCATCCCAACAGACCGTTGACCTTGACTCTCCTTCGTACCATCACCAAATCAGATTCAGATCCACTGCACTCCTATTCCAATCCCAAATCCTCCATGAAACCCTGAATCCACCAATGGTTATGACCTCCAAACCCTCTCCAATGGCGCAAGATCTCAAACCCTCCATCAACTCCTTCTCGCTCCCCAAAACCCTAAAGCTCAAAACCAAGCAGCAGGAGCTCCTCATTCGCGTCGCCACACTCGCCCTCATCTATGTTCTCGCGTTCATCACGCGCCTCTTCAGCGTCCTACGTTATGAGTCCATGATCCATGAGTTCGACCCCTACTTCAACTACCGCACCACGCTCTTCCTCACGCGCAATGGCTTCGCCGAGTTCTGGAACTGGTTCGACTCCGAGTCCTGGTACCCGCTCGGCCGCATTATCGGCGGTACGCTCTACCCCGGTCTCATGGTCACCGCCGCCGCCATCCACTCCCTCCTCCGCTTCCTTCGCTTCGCTGTCCACATCCGCGAGGTCTGCGTTCTCACCGCCCCTTTCTTCGCCTCCAACACCACCCTCGTCGCGTACTTCTTCGCCAAAGAGATCTGGGACTCCGGCGCCGGCATCGTCGCTGCCGCGCTCATCGCGATCTGCCCCGGCTACATCTCGCGCTCCGTCGCCGGGTCATACGACAACGAGGGTGTGGCGATCTTCGCGCTGTTGCTGACCTTTTACCTCTTTGTGAAGGCCGTGAACACTGGTTCGCTGGCGTGGGCTTTGGGTTCGGCGTTTGGGTACTTCTACATGGTGTCGGCGTGGGGAGGTTACGTTTTTATAATCAATTTGGTGCCGCTTTATGTCCTGGTGCTGCTTGTGACGGGAAGGTACTCGTTGAGGTTGTATGTGGCGTATAACTGCATGTATGTGTTGGGGATGCTGCTGGCAATGCAGATTAGGTTTGTGGGGTTCCAGCATGTGCAGTCCGGGGAACACATGGGGGCAATGGGCGTGTTTTTCTTGCTGCAGGTGTTTTTCTTCTTGGATTGGGTGAGGCATTTGCTCAGTGACACTAAGTTGTTTCAGGCCTTTTTGAAGATAACTGTGACCAGTGCGGTTGCTGTTGGTGCTGTTGCTTTGGGAGTGGGCATGGCGTCTGGTTATATTTCTCCATGGACTGGGAGGTTTTACTCCTTGCTTGATCCAACGTATGCTAAGGATCACATTCCGATTATTGCATCTGTCTCTGAGCATCAGCCAACTGCTTGGTCATCTTTCATGTTTGATTTCCATATCTTGCTGTTCCTTTTCCCTGCTGGTCTCTATTTTTGCTTCAAGCGCTTGTCTGATGCCACGATCTTTTTAGTTATGTATGGTCTTACAAGCATGTATTTTGCTGGGGTTATGGTTCGGTTGATTCTTGTTGCTACCCCTGCTGTGTGCCTCATTAGTGCTATTGCGGTTTCTGCCACCGTGAAGAATTTGACACGGGTAGTGAGGGCCAAGAGTCCAGCTGTTCAAAGTGGATCTACTAAAGGAACTAGCGCTGCAAAAAGTTCTTCCAAGGGTGTAGTGGACAACTCCCAGCCTTTCCAAAAGAATGGGGCGATTGTGTTACTCCTTGGTGCTTTCTATTTGCTCAGTAGATATGCTATTCACTGCACTTGGGTCACATCAGAGGCTTACTCATCACCCTCAATTGTCTTGGCTGCGAGGGGTTCTCATGGACAAAGGGTCATCTTTGATGACTATCGTGAGGCATACTTTTGGCTTCGCCAGAACACTCCACCAGATGCCAAGGTGATGTCATGGTGGGATTATGGTTATCAAATCACTGCCATGGGAAACAGAACTGTAATTGTTGACAATAACACCTGGAACAACACTCACATAGCTACTGTTGGGCGAGCAATGTCATCCTATGAGGATGAGGCTTATGAGATAATGAGATCGCTTGACGTTGACTATGTATTAGTCGTGTTTGGTGGTGTTACTGGTTATTCTTCTGATGATATTAATAAATTTCTTTGGATGGTGAGAATTGGTGGTGGAGTTTTTCCTGTGATAAAGGAACCTGATTATCTTGTTAATGGAGAATATCGTGTAGATAAAGGAGCAGCTCCAAAGATGTTGAACTGTCTTATGTACAAGCTATGTTATTATCGGTTTGGGGAGCTTTCAACAGAATATGGCAAACCACCTGGATATGATCGCGCTAGAGGTGTTGAGATTGGAAATAAGGACATAAAGCTTGAGTACTTGGAAGAGGCATTCACTACACAGAATTGGATAGTTCGTATTTATAAAGTGAAACCTCCTAAAAACAGGTGGTAA 3330 0.4985 MGRQAVTRLLSSIASHRHGLRQFSAATPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTNMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLRKFLADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIRTLREAGVTVVESPAKIGAAMLDVFKKKGLVQYRVWNLHYPNPIPSPSSQQTVDLDSPSYHHQIRFRSTALLFQSQILHETLNPPMVMTSKPSPMAQDLKPSINSFSLPKTLKLKTKQQELLIRVATLALIYVLAFITRLFSVLRYESMIHEFDPYFNYRTTLFLTRNGFAEFWNWFDSESWYPLGRIIGGTLYPGLMVTAAAIHSLLRFLRFAVHIREVCVLTAPFFASNTTLVAYFFAKEIWDSGAGIVAAALIAICPGYISRSVAGSYDNEGVAIFALLLTFYLFVKAVNTGSLAWALGSAFGYFYMVSAWGGYVFIINLVPLYVLVLLVTGRYSLRLYVAYNCMYVLGMLLAMQIRFVGFQHVQSGEHMGAMGVFFLLQVFFFLDWVRHLLSDTKLFQAFLKITVTSAVAVGAVALGVGMASGYISPWTGRFYSLLDPTYAKDHIPIIASVSEHQPTAWSSFMFDFHILLFLFPAGLYFCFKRLSDATIFLVMYGLTSMYFAGVMVRLILVATPAVCLISAIAVSATVKNLTRVVRAKSPAVQSGSTKGTSAAKSSSKGVVDNSQPFQKNGAIVLLLGAFYLLSRYAIHCTWVTSEAYSSPSIVLAARGSHGQRVIFDDYREAYFWLRQNTPPDAKVMSWWDYGYQITAMGNRTVIVDNNTWNNTHIATVGRAMSSYEDEAYEIMRSLDVDYVLVVFGGVTGYSSDDINKFLWMVRIGGGVFPVIKEPDYLVNGEYRVDKGAAPKMLNCLMYKLCYYRFGELSTEYGKPPGYDRARGVEIGNKDIKLEYLEEAFTTQNWIVRIYKVKPPKNRW 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02946 1109 Pfam CoA binding domain 33 126 IPR003781 -
Spst4g02946 1109 FunFam Succinate--CoA ligase [ADP-forming] subunit alpha 27 148 - -
Spst4g02946 1109 Pfam CoA-ligase 179 300 IPR005811 GO:0003824
Spst4g02946 1109 SUPERFAMILY Succinyl-CoA synthetase domains 151 314 IPR016102 -
Spst4g02946 1109 Gene3D - 29 148 - -
Spst4g02946 1109 PRINTS Succinyl-CoA synthase signature 205 223 - -
Spst4g02946 1109 PRINTS Succinyl-CoA synthase signature 269 286 - -
Spst4g02946 1109 PRINTS Succinyl-CoA synthase signature 109 126 - -
Spst4g02946 1109 PRINTS Succinyl-CoA synthase signature 236 249 - -
Spst4g02946 1109 SMART CoA_binding_2 31 127 IPR003781 -
Spst4g02946 1109 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 265 278 IPR017440 -
Spst4g02946 1109 Hamap Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 28 317 IPR005810 GO:0003824
Spst4g02946 1109 PANTHER DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT 402 1108 IPR003674 GO:0004576|GO:0006486|GO:0016020
Spst4g02946 1109 NCBIfam succinate--CoA ligase subunit alpha 31 316 IPR005810 GO:0003824
Spst4g02946 1109 FunFam Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial 149 322 - -
Spst4g02946 1109 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 180 209 IPR033847 -
Spst4g02946 1109 Pfam Oligosaccharyl transferase STT3 subunit 416 895 IPR003674 GO:0004576|GO:0006486|GO:0016020
Spst4g02946 1109 Gene3D - 149 323 IPR016102 -
Spst4g02946 1109 FunFam dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A 911 1063 - -
Spst4g02946 1109 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 28 150 IPR036291 -
Spst4g02946 1109 Gene3D - 912 1061 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02946 Spst-Chr4 69076728 69087520 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02946 382 1108 Miscellaneous Gene Families AT1G34130 86.008 0.0 1285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02946 K07151 - gmx:100816018 1366.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02946 4 69076728 69087520 Spst4g02946 4 69076728 69087520 ECH