LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst5g02836	ATGGGTCGCCAAGCGTTAACCAAGCTGATCGCCACCTTCGCCTCCCGTCGCGGCCACTCCATCCGCCACTTCACGGCGAGTCCCACTCCCTCCCCCGCCGTCTTTGTTGACAAGACCACCCGCGTCATTTGCCAAGGCATTACCGGCAAGAACGGCACCTTCCACACCGAGCAAGCTATCGAATACGGCACCAAAATGGTGGGTGGTGTGACACCAAAGAAGGGTGGTACGGAGCATTTGGGTCTACCTGTGTTCAACACTGTTGCGGAGGCGAAGGCTGAGACGAAGGCCAATGCTTCAGTCATCTATGTTCCTCCACCTTTTGCCGCGGCAGCAATTATGGAAGCCATGGAGGCTGAATTGGATCTTGTTGTTTGCATCACTGAAGGCATTCCCCAGCATGATATGGTAAAAGTTAAAGCTGCTCTTAACCAGCAGTCCAAAACTCGTTTGATAGGACCAAACTGCCCTGGTATCATCAAGCCTGGGGAATGCAAAATCGGAATCATGCCTGGTTACATTCATAAACCTGGCCGTATTGGAATTGTATCTCGTTCTGGTACCTTGACATATGAAGCGGTTTTCCAAACGACTGCTGTTGGCCTTGGACAATCCACATGTGTCGGTATTGGAGGAGATCCCTTTAATGGAACAAACTTTGTTGATTGCCTTGAGAAATTCATTGCAGACCCTCAGACAGAAGGTATCATTCTTATTGGAGAGATTGGAGGAACTGCAGAAGAGGATGCTGCTGCATTAATCAAGGCAAGTGGTACCGAGAAGCCTGTTGTTGCATTTATTGCTGGATTAACTGCTCCCCCTGGCCGTCGTATGGGCCATGCTGGAGCTATTGTCTCGGGTGGCAAGGGCACCGCACAAGACAAAATCAAAACCTTGAGGGAAGCTGGTGTCACCGTTGTGGAGTCCCCTGCCAAAATTGGAGTCGCTATGCTAGATGTTTTCAAGCAGAGGGGTTTGGTGCAATAG	987	0.5056	MGRQALTKLIATFASRRGHSIRHFTASPTPSPAVFVDKTTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVKVKAALNQQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFIADPQTEGIILIGEIGGTAEEDAAALIKASGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGVAMLDVFKQRGLVQ	328

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst5g02836	328	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	33	154	IPR036291	-
	Arst5g02836	328	Hamap	Succinate--CoA ligase [ADP-forming] subunit alpha [sucD].	32	321	IPR005810	GO:0003824
	Arst5g02836	328	ProSitePatterns	ATP-citrate lyase / succinyl-CoA ligases family signature 1.	184	213	IPR033847	-
	Arst5g02836	328	ProSitePatterns	ATP-citrate lyase / succinyl-CoA ligases family active site.	269	282	IPR017440	-
	Arst5g02836	328	PRINTS	Succinyl-CoA synthase signature	209	227	-	-
	Arst5g02836	328	PRINTS	Succinyl-CoA synthase signature	240	253	-	-
	Arst5g02836	328	PRINTS	Succinyl-CoA synthase signature	113	130	-	-
	Arst5g02836	328	PRINTS	Succinyl-CoA synthase signature	273	290	-	-
	Arst5g02836	328	Pfam	CoA-ligase	183	304	IPR005811	GO:0003824
	Arst5g02836	328	SMART	CoA_binding_2	35	131	IPR003781	-
	Arst5g02836	328	Gene3D	-	153	326	IPR016102	-
	Arst5g02836	328	NCBIfam	succinate--CoA ligase subunit alpha	35	320	IPR005810	GO:0003824
	Arst5g02836	328	PIRSF	SucCS_alpha	30	324	IPR005810	GO:0003824
	Arst5g02836	328	Pfam	CoA binding domain	37	130	IPR003781	-
	Arst5g02836	328	Gene3D	-	30	152	-	-
	Arst5g02836	328	SUPERFAMILY	Succinyl-CoA synthetase domains	155	323	IPR016102	-
	Arst5g02836	328	FunFam	Succinate--CoA ligase [ADP-forming] subunit alpha	31	152	-	-
	Arst5g02836	328	PANTHER	SUCCINYL-COA LIGASE SUBUNIT ALPHA	26	326	-	-
	Arst5g02836	328	FunFam	Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial	153	326	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst5g02836	121	323	Acyl Lipid Metabolism Gene Families	AT3G06650	32.243	2.94e-22	95.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst5g02836	K01899		-	gmx:100815484	587.415

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Arst5g02836	5	83777162	83781705	Arst5g02836	5	83777162	83781705	ECH