Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00070 ATGGAAAGGGAAAATTGGAGAGACCATAGCAATAGCAATGGGAATTTTTACGATAGGTTTGTGTGTGATTATGATAATGATGATGGAGAGGTACCCAGCAGAGAACGTAGCCCTACCCCTACCAAGCCTTCTTCGGTGTCCTCATCGCCTCCCAGACTTGGCTACATCGAACACCATGTTTCCAAATTTGATACCTTGGCTGGTGTCGCTATCAAGTACGGTGTTGAGGTGGCAGACATCAGAAAGATGAATAACCTTGTTACAGACCATCAAATGTTTGCACTTAAAACTCTCCACATTCCGCTACCTGGAAGGCACCCTCCATCTCCTTGTTTATCAAATGGTTCCAGTACTCCAGGACATGGTAACTTGGATCACAGTCCACCACCTAATCAGGCACACCGTGATCTGCTTGATTCATTCCAATCCCTGAGAATAAAGTCATCGGACCGGAAGGTCTCCCCAGCCATGAGCTCATTACAGGGTTACTATGGACTTAAAGTGGCCTCAAGTCCCTCAGAAGATGGTCCATTCCCCAGAAACTTACCTATGTCTGACCGACCTCTGAGTCGTCACCGGAAATCCAAAAGTTTGGTCAATGTAATTTTGGAAGAGATTATGGAAAAATCAGATGATTCACCGGCTGCAAAAACCAGGGAAGTTGACTCTGGTAAATGGAATGACAAACTTGTCCAGAGACGCCAGAAATCTGTAGCTGACTTTACCAGGATACCAGAGTTGCTTTTGAAGGAGGATAATAGCATCAGTGGTGTTCTTCCATCAAGAACAGGAAAGGGCTTAGCTCTGAGACAGAAAGCAGCTAGCCGAACCACAGTGGCAACCGATTCCGAACCAATTGGTTTGAATCCTGTGGCACTGGGCACGGGGGATGCTTCTCTAAATGATGGTTCATCCGGGGTGAGGAAATCATCAAGCACTTCTTGTTTACAGGATCAAGATAACAGTGGCTCTTCATCCATTTGGCCAACCGCAATGTGGAATTTGAAACCAGACTTGCAGGCCCTTTCAACTGCAGCCATTGGAAAACCAATCTTTGATGGCTTGCCCAAGCCATTAACTGGTCGGAAAAATAAAGCTGCACTTGATTAA 1110 0.4586 MERENWRDHSNSNGNFYDRFVCDYDNDDGEVPSRERSPTPTKPSSVSSSPPRLGYIEHHVSKFDTLAGVAIKYGVEVADIRKMNNLVTDHQMFALKTLHIPLPGRHPPSPCLSNGSSTPGHGNLDHSPPPNQAHRDLLDSFQSLRIKSSDRKVSPAMSSLQGYYGLKVASSPSEDGPFPRNLPMSDRPLSRHRKSKSLVNVILEEIMEKSDDSPAAKTREVDSGKWNDKLVQRRQKSVADFTRIPELLLKEDNSISGVLPSRTGKGLALRQKAASRTTVATDSEPIGLNPVALGTGDASLNDGSSGVRKSSSTSCLQDQDNSGSSSIWPTAMWNLKPDLQALSTAAIGKPIFDGLPKPLTGRKNKAALD 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00070 369 Gene3D LysM domain 42 107 IPR036779 -
Pumo8g00070 369 MobiDBLite consensus disorder prediction 106 135 - -
Pumo8g00070 369 CDD LysM 64 100 IPR018392 -
Pumo8g00070 369 PANTHER LYSM AND PUTATIVE PEPTIDOGLYCAN-BINDING DOMAIN-CONTAINING PROTEIN 30 295 IPR045030 -
Pumo8g00070 369 MobiDBLite consensus disorder prediction 37 51 - -
Pumo8g00070 369 MobiDBLite consensus disorder prediction 21 35 - -
Pumo8g00070 369 MobiDBLite consensus disorder prediction 298 328 - -
Pumo8g00070 369 ProSiteProfiles LysM domain profile. 56 100 IPR018392 -
Pumo8g00070 369 SMART LysM_2 57 101 IPR018392 -
Pumo8g00070 369 MobiDBLite consensus disorder prediction 1 53 - -
Pumo8g00070 369 MobiDBLite consensus disorder prediction 169 193 - -
Pumo8g00070 369 Pfam LysM domain 58 101 IPR018392 -
Pumo8g00070 369 MobiDBLite consensus disorder prediction 110 125 - -
Pumo8g00070 369 SUPERFAMILY LysM domain 56 101 IPR036779 -
Pumo8g00070 369 MobiDBLite consensus disorder prediction 293 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00070 Pumo-Chr8 1957210 1961220 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00070 - - gmx:100786352 582.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g00070 8 1957210 1961220 Pumo8g00070 8 1957210 1961220 ECH