Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01868 ATGGAAAGGGAAAAGTGGAAAGAGAATTGCAATAGCAATAGCAATAACTATAGTAACACCAATGGATACTGTTACGATAGGTTTGTGTTTGATGATTACGACGGAGAGGTACCCAGCGCAGAACGTAGTCCTGCTAAGCCTTCTTCGCTGAATTCTTCGCCTCCCAGACTTGGATACATTGAACACCATGTTTCCAAATACGATACATTGGCTGGTGTAGCTATCAAGTACGGTGTTGAGGTTGCAGATGTCAAAAGGTTGAATAACCTTGTTACGGACCATCAAATGTTTGCTCTTAAAACTCTCCACATTCCGCTACCTGGAAGACACCCCCCATCACCTTGTTTATCAAATGGTTCCACTACTCCTGGATATGGTAATTCAGATCACAATTCTCCTACTACTCAGGCACACCATGATCTGCTTGATTCATTCCCATCACTTAAAATGAAGTCATCTGAGCGGAAGGTCTCACCAGCCATGAGCTCATTACAGGGTTTCTATGGACTTAAAGGGTCCTCAATTCCCTCAGAAGATGGTTTCCCCAGAAACTTATCTACGTCTGGCAGACCTCTCAGTCATCACCGGAAATCTAAAAGCTTGGTGAATGTAATTTTGGAAGAGATTATGGAAAAATCAAATGAGGCATCAGCTGCAATAACCAAGGAAGTTGACTCCAGCAAATGGAATTACAATCTTGTCCAGAGACGTCAGAAATCTGTGGCGGACTTTAGCAGGATACCTGAGCTGCTTCTGAGGGAGGATAATAGCAGCACTGGTGTTCTTCCACCAAGAACTGGAAAGGGCTTAGCTCTGAGACAGAAAGTAGCTAGCCGAACTACATTGGCAACTGATTCCGAGCAAAATGGTTTGAGTCCTGCGGCAATGGGTATGGGGGATGCTACATTAAATGAAGGTTCATCCAGGGTGAGGAAATCATCAAGTACTTCCTGTTTACATGATCAAGATAACAGTGGCTCCTCATCCATTTGGCCAACCTCAATGTGGAATTTGAAACCAGATTTGCAGGCCCTCTCAACTGCAGCCATTGGAAAACCAATCTTTGATGGCTTGCCCAAGCCAATAACTGGTCGAAAAAATAAAGCTGCACTTGATTAA 1119 0.4379 MEREKWKENCNSNSNNYSNTNGYCYDRFVFDDYDGEVPSAERSPAKPSSLNSSPPRLGYIEHHVSKYDTLAGVAIKYGVEVADVKRLNNLVTDHQMFALKTLHIPLPGRHPPSPCLSNGSTTPGYGNSDHNSPTTQAHHDLLDSFPSLKMKSSERKVSPAMSSLQGFYGLKGSSIPSEDGFPRNLSTSGRPLSHHRKSKSLVNVILEEIMEKSNEASAAITKEVDSSKWNYNLVQRRQKSVADFSRIPELLLREDNSSTGVLPPRTGKGLALRQKVASRTTLATDSEQNGLSPAAMGMGDATLNEGSSRVRKSSSTSCLHDQDNSGSSSIWPTSMWNLKPDLQALSTAAIGKPIFDGLPKPITGRKNKAALD 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01868 372 SMART LysM_2 61 105 IPR018392 -
Vian10g01868 372 MobiDBLite consensus disorder prediction 277 333 - -
Vian10g01868 372 MobiDBLite consensus disorder prediction 306 333 - -
Vian10g01868 372 ProSiteProfiles LysM domain profile. 60 104 IPR018392 -
Vian10g01868 372 MobiDBLite consensus disorder prediction 110 137 - -
Vian10g01868 372 Pfam LysM domain 62 105 IPR018392 -
Vian10g01868 372 PANTHER LYSM AND PUTATIVE PEPTIDOGLYCAN-BINDING DOMAIN-CONTAINING PROTEIN 35 295 IPR045030 -
Vian10g01868 372 CDD LysM 60 104 IPR018392 -
Vian10g01868 372 MobiDBLite consensus disorder prediction 114 137 - -
Vian10g01868 372 SUPERFAMILY LysM domain 60 105 IPR036779 -
Vian10g01868 372 Gene3D LysM domain 47 111 IPR036779 -
Vian10g01868 372 MobiDBLite consensus disorder prediction 277 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01868 Vian-Chr10 30649771 30658419 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01868 - - pvu:PHAVU_003G005400g 618.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01868 10 30649771 30658419 Vian10g01868 10 30649771 30658419 ECH