Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00975 ATGGGTCGTCAGGCCGTTGCCAAGTTGATCGGTTCCATTGCGTCACGCCAAACCTCTACGTCCTCACCATTTTCTTCTACTTCCTGGTCTCAGATCCGCCATTACACGGCAGCTCCGCCACCCCCTCCCACCGTCTTTGTTGACAAGAACACGCGCGTCATCTGCCAGGGTATCACTGGAAAAAATGGCACTTTCCACACAGAACAAGCCATCGAATATGGAACCAAGAtgGTGGGTGGTGTAACACCGAAGAAGGGTGGCACAGAACATATGGGCCTTCCTGTCTTTAATACTGTTGCTGAAGCGAAGGCTGAAACAAAGGCTAATGCTTCAGTGATCTATGTTCCTCCACCATTTGCTGCAGCTGCCATTATGGAGGCAGTTGAGGCAGAGCTGGATCTTGTAGTATGCATTACTGAAGGGATTCCTCAGCATGATATGctACGAGTGAAAGCTGCTCTTAACCAACAGTCCAAAACTCGTCTGATTGGACCAAACTGCCCTGGTATAATCAAGCCTGGGGAATGTAAAATTGGAATCATGCCAGGTTACATACACAAACCTGGTCGCATAGGAATTGTTTCTCGTTCTGGTACGTTGACATATGAAGCGGTCTTTCAAACGACTGCTGTTGGCCTTGGACAATCCACTTGTGTGGGCATAGGGGGAGATCCCTTTAATGGAACAAACTTTGTTGATTGTGTTACAAAGTTCCTAGAAGATCCTCAGTCTGAAGGTATCATTCTCATAGGAGAGATAGGGGGAACTGCAGAAGAGGATGCGGCTGCACTTATTAAgGAAAGTGGTACACAGAAGCCTATTGTTGCATTTATTGCTGGATTAACTGCCCCCCCTGGCCGCCGGATGGGTCATGCTGGAGcTATTGTGTCAGGTGGCAAGGGTACCGCACAAGACAAGATTAAGACCCTAAGGGAAGCTGGAGTTACAGTTGTGGAGTCCCCTGCTAAAATTGGAGTTGCCATGCTAGATGCTTTCAAACAGAGGGGCCTGGTGCAGTA 1019 0.4818 MGRQAVAKLIGSIASRQTSTSSPFSSTSWSQIRHYTAAPPPPPTVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHMGLPVFNTVAEAKAETKANASVIYVPPPFAAAAIMEAVEAELDLVVCITEGIPQHDMLRVKAALNQQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFLEDPQSEGIILIGEIGGTAEEDAAALIKESGTQKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGVAMLDAFKQRGLVQ 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00975 339 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 44 165 IPR036291 -
Bva04g00975 339 Pfam CoA-ligase 194 315 IPR005811 GO:0003824
Bva04g00975 339 SMART CoA_binding_2 46 142 IPR003781 -
Bva04g00975 339 Gene3D - 164 337 IPR016102 -
Bva04g00975 339 TIGRFAM sucCoAalpha: succinate-CoA ligase, alpha subunit 46 329 IPR005810 GO:0003824
Bva04g00975 339 Gene3D - 44 163 - -
Bva04g00975 339 SUPERFAMILY Succinyl-CoA synthetase domains 166 330 IPR016102 -
Bva04g00975 339 PIRSF SucCS_alpha 42 335 IPR005810 GO:0003824
Bva04g00975 339 PRINTS Succinyl-CoA synthase signature 284 301 - -
Bva04g00975 339 PRINTS Succinyl-CoA synthase signature 251 264 - -
Bva04g00975 339 PRINTS Succinyl-CoA synthase signature 220 238 - -
Bva04g00975 339 PRINTS Succinyl-CoA synthase signature 124 141 - -
Bva04g00975 339 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 195 224 IPR033847 -
Bva04g00975 339 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 280 293 IPR017440 -
Bva04g00975 339 PANTHER SUCCINATE--COA LIGASE [ADP-FORMING] SUBUNIT ALPHA-1, MITOCHONDRIAL 6 338 - -
Bva04g00975 339 PANTHER SUCCINYL-COA LIGASE SUBUNIT ALPHA 6 338 - -
Bva04g00975 339 Hamap Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 43 332 IPR005810 GO:0003824
Bva04g00975 339 Pfam CoA binding domain 48 141 IPR003781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00975 Bva-Chr4 6396721 6403644 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00975 132 334 Acyl Lipid Metabolism Gene Families AT3G06650 31.776 8.71e-23 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00975 K01899 - pop:7454042 593.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00975 04 6396721 6403644 Bva04g00975 04 6396721 6403644 ECH