Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1845 ATGATGGGTCGCCAAGCGGTAGCCAAGTTGATCGGCTCGATTGCATCACGCGCCAAATCAACTTCATCTTCACCGTCGTCATTTTCTCATTCTTACTCTCAGATTCGCCATTTCACGTCGTCTCCGCCGCCGCCTCCCGCCGTCTTCGCTGACAAGAACACCCGCGTCATCTGCCAAGGCATCACCGGCAAGAATGGAACTTTCCACTCTGAGCAAGCTATTGAATATGGAACCAAGATGGTGGGTGGTGTAACACCAAAGAAGGGTGGAACAGAACACTTAGGACTTCCCGTGTTTAACACTGTAGCTGAAGCAAAGGCTGAAACCAAGGCCAATGCTTCAGTCATCTATGTTCCTCCACCGTTTGCTGCAGCTGCTATTATGGAGGCAATGGAGGCTGAGTTGGATCTTGTTGTCTGTATTACAGAAGGGATTCCTCAGCATGATATGGTGCGAGTGAAAGCTGCTCTTAACAGGCAATCCAAAACTCGTCTCATTGGACCAAACTGTCCTGGTATCATCAAGCCTGGAGAATGTAAAATTGGAATCATGCCAGGTTACATTCATAAACCTGGTCGAATAGGAATTGTTTCTCGTTCTGGTACCTTGACATATGAAGCGGTTTTCCAAACAACTGCTGTTGGACTTGGACAATCCACTTGTGTAGGCATAGGGGGCGACCCTTTTAATGGAACAAACTTTGTTGATTGCATTGAGCGGTTCCTAGCAGATCCCCAGACAGAAGGTATCATTCTGATCGGAGAGATAGGGGGAACTGCAGAAGAGGATGCTGCTGCACTAATTAAGGCAAGTGGGACTGAGAAGCCTATTGTTGCATTTATTGCTGGATTAACTGCTCCCCCTGGCCGTCGTATGGGTCATGCTGGAGCAATTGTGTCAGGTGGCAAGGGTACTGCACAGGACAAAATTAAGACCCTCAGGGAAGCTGGGGTCACTGTTGTGGAGTCCCCTGCTAAAATTGGAGTTGCCATGCTAGATGTTTTCAAGCAGAGGGGCCTGGTGCAATATGAATTTCAAACAATTTCCAAATTGCTGTCACAGCAAAGACATAGAAATTTAGAAAATATTGTAAAGGAAAAAACAACTTCCACAGGTCCACTACCACTTCCGCTTCCATTTCGATTTTGCTCCAAAACAAAACAACTCACTTGTCGTAATTGGTTGTACACTAATCCTACATTGGATCATCGTATATTTGGGTTTCGTTTCCCACCAGAAACCAAACTCCTTAGTCCCAGTTAG 1263 0.464 MMGRQAVAKLIGSIASRAKSTSSSPSSFSHSYSQIRHFTSSPPPPPAVFADKNTRVICQGITGKNGTFHSEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCIERFLADPQTEGIILIGEIGGTAEEDAAALIKASGTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGVAMLDVFKQRGLVQYEFQTISKLLSQQRHRNLENIVKEKTTSTGPLPLPLPFRFCSKTKQLTCRNWLYTNPTLDHRIFGFRFPPETKLLSPS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1845 420 Pfam CoA binding domain 51 144 IPR003781 -
Glsi01g1845 420 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 198 227 IPR033847 -
Glsi01g1845 420 FunFam Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial 167 340 - -
Glsi01g1845 420 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 283 296 IPR017440 -
Glsi01g1845 420 PANTHER SUCCINYL-COA LIGASE SUBUNIT ALPHA 39 340 - -
Glsi01g1845 420 Hamap Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 46 335 IPR005810 GO:0003824
Glsi01g1845 420 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 47 168 IPR036291 -
Glsi01g1845 420 FunFam Succinate--CoA ligase [ADP-forming] subunit alpha 46 166 - -
Glsi01g1845 420 NCBIfam succinate--CoA ligase subunit alpha 49 334 IPR005810 GO:0003824
Glsi01g1845 420 Gene3D - 47 166 - -
Glsi01g1845 420 PRINTS Succinyl-CoA synthase signature 254 267 - -
Glsi01g1845 420 PRINTS Succinyl-CoA synthase signature 223 241 - -
Glsi01g1845 420 PRINTS Succinyl-CoA synthase signature 287 304 - -
Glsi01g1845 420 PRINTS Succinyl-CoA synthase signature 127 144 - -
Glsi01g1845 420 Gene3D - 167 341 IPR016102 -
Glsi01g1845 420 SMART CoA_binding_2 49 145 IPR003781 -
Glsi01g1845 420 SUPERFAMILY Succinyl-CoA synthetase domains 169 337 IPR016102 -
Glsi01g1845 420 Pfam CoA-ligase 197 318 IPR005811 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1845 Glsi-ChrGlsi01 82015899 82025988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1845 135 337 Acyl Lipid Metabolism Gene Families AT3G06650 32.710 5.50e-23 99.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi01g1845 01 82015899 82025988 Glsi01g1845 01 82015899 82025988 ECH