Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2326 ATGTCGCCGTCAAACGCCTTGCACAACGGCGGCGGCGGTGGTGGCGGTGGTGGGAATGGGATGAGTTATATCAAGCACCAGGTTTCAAAACTGGACACACTTGCTGGTGTGGCCATCAAGTATGGTGTTGAGGTAGCTGACATTAAAAGGATGAATGGGTTAGCCTCAGATCTTCAAATGTTTGCACTGAAGACATTGAAAATTCCATTACCAGGACGACATCCTCCATCTTCACCTCCTAGTCAGCCTGATGAAGACCCTGCCAAGTTGAGAGAGAATGGAAATCATAGGAGATTCCCTCGCCTGGGTCAATCTGCCATGAAGGAACCTCTCCAGAACTTCAGACTGAAAGCACCTCAACCAAAGCTTTCCCCAGCTATGTCCATTTTACAGAAATACTATGGACTCCAGTCTTCAAGTTCAAGAGAAATATCTGAAGAAACCGAAATGGCAATGTACAGATCTTCTAGTTCAGATCATTCCAGTGAGGAATGGCTTCCTAAAGCCTCACCAATTTCAGACCTGCCAACAAACCATAACCCCAAGTCAACAAATTTAGTGTTTGATTTACTGACTGGATATGATGACATGCCTGAGTATGTGCCTTTTGCTGAAATGGGGGATGGCGGAGGTGAGAAGTCTGATGAGAAATCTGTCCGCAGACGTCAGAAAGCTGAAGTTGATAATGGAAATACTACACCAGAAAGAGGCAACAGTGGTGGATCTAATGGTTCTTCAACTGGAAAAGCAATATCCATGAGGCCAAAATCAGCTAGTCGAGCGACGCTGCTCCCCGAGTCAGAATCAGGATGGTTAGACTCCATTCCAATGGGGTTGGGAGACTCTATATTTACTGATAGACTTTCTGGAGTTCGCAAATCATCAAGCGCGTCAAGCCTCAGAGAGCAGGAAAAGAACAATTCAGCAACAGGCTGGCCACCTGCAAGATGGAGTTTGAAACCAGACTTGCAAGCAGCCATTTCCAAACCTATCTTCGATGGCTTACCGATCCCGATAAGTGGCCGCAGAAGTAAAGCTGCACTTGATTAG 1050 0.4638 MSPSNALHNGGGGGGGGGNGMSYIKHQVSKLDTLAGVAIKYGVEVADIKRMNGLASDLQMFALKTLKIPLPGRHPPSSPPSQPDEDPAKLRENGNHRRFPRLGQSAMKEPLQNFRLKAPQPKLSPAMSILQKYYGLQSSSSREISEETEMAMYRSSSSDHSSEEWLPKASPISDLPTNHNPKSTNLVFDLLTGYDDMPEYVPFAEMGDGGGEKSDEKSVRRRQKAEVDNGNTTPERGNSGGSNGSSTGKAISMRPKSASRATLLPESESGWLDSIPMGLGDSIFTDRLSGVRKSSSASSLREQEKNNSATGWPPARWSLKPDLQAAISKPIFDGLPIPISGRRSKAALD* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2326 349 ProSiteProfiles LysM domain profile. 24 68 IPR018392 -
Lja2g2326 349 Gene3D LysM domain 19 77 IPR036779 -
Lja2g2326 349 MobiDBLite consensus disorder prediction 202 275 - -
Lja2g2326 349 PANTHER LOC443603 PROTEIN-RELATED 18 349 IPR045030 -
Lja2g2326 349 CDD LysM 26 68 IPR018392 -
Lja2g2326 349 MobiDBLite consensus disorder prediction 209 229 - -
Lja2g2326 349 MobiDBLite consensus disorder prediction 230 253 - -
Lja2g2326 349 Pfam LysM domain 26 69 IPR018392 -
Lja2g2326 349 MobiDBLite consensus disorder prediction 290 313 - -
Lja2g2326 349 SUPERFAMILY LysM domain 24 69 IPR036779 -
Lja2g2326 349 MobiDBLite consensus disorder prediction 69 104 - -
Lja2g2326 349 MobiDBLite consensus disorder prediction 154 180 - -
Lja2g2326 349 SMART LysM_2 25 69 IPR018392 -
Lja2g2326 349 MobiDBLite consensus disorder prediction 290 317 - -
Lja2g2326 349 PANTHER PEPTIDOGLYCAN-BINDING LYSM DOMAIN-CONTAINING PROTEIN 18 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2326 Lja-Chr2 27893490 27896670 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2326 - - lja:Lj2g3v0609800.1 569.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2326 2 27893490 27896670 Lja2g2326 2 27893490 27896670 ECH