Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03962 ATGATGGAAAGGGATAACAATGGTTATTATGAGAATCAATTGTTGTGTGAAAATGGTCGAGAATCAGTTACGATGCATTCTTCCATGACTTCTTCTCCGCCTAAACTTGGATATATTGAACATCATGTCTCCAAATTCGATACCTTGGTTGGCATTGCAATCAAATATGGTGTTGAGGTTACTGACATCAAAAGAATGAATAGCCTTGTTACAGACCATCAGATATTTGCGCTTAAAACAGTTCAAATTCCATTACCCGGAAGACACCCTCCGTCTCCTTGTTTATCAAATGGTTCCAGTACTCCTGGACATGGCAACTCTTCTAACAGCCCACCTATTAATGCGCCACGCGAATTGCTGGAATCGTTCCAGTCCGTAAGATTTAAGAGTCCTGACCGGAAGGTCTCTCCTGCTATGAGCTCATTACAGGGTTATTATGGACTTCAAGTTCTCCCTATCTCCTCAGAAAACGGTTCATCATCCAAGAACATGCCTATGTCTGACCGACCCTTGAGTCGTCACCGAAAATCCAAAAGTTTAGTCAATGTCATTTTGGAAGAAATTATGGAAAAGGATGGTACAGCACCAGCTGGAGAAACCTGGGAACTTAACTCTGATAAATGGAATGACAAATTTTCCCAGAGACGTCAGAAATCTGTAGCTGACTTTACCAGGATACCTGAGTTGATTCTGAGGGAGGATATTGGCAGCAATGGCGGTCTTCCTTCAAGAACAGGAAAGGGTTTAGCTCTGAGACAGAAAGCAGCCAGCCGAACTGCAGTGACAAATGATTCTGAATCAAATGGTTTTACTCCTGTGCCAATGGTTACGGGGGATGGTTTTCAAACCGATAGTTCATATGGTGTTAGGAAATCGTCCAGTACATCTTGTTTGCAAGAGCAGGATAACTGCAGCTCCTCATCCATTTGGCCATCCTCAATGTGGAATTTGAAACCCGATTTACAGGCCCTTTCTACTGCAGCTATTGGAAAACCGATCTTTGATGGTTTGCCAAAGCCATTAACTGGGCGAAGGAATAAAGCTGCACTTGATTAA 1056 0.428 MMERDNNGYYENQLLCENGRESVTMHSSMTSSPPKLGYIEHHVSKFDTLVGIAIKYGVEVTDIKRMNSLVTDHQIFALKTVQIPLPGRHPPSPCLSNGSSTPGHGNSSNSPPINAPRELLESFQSVRFKSPDRKVSPAMSSLQGYYGLQVLPISSENGSSSKNMPMSDRPLSRHRKSKSLVNVILEEIMEKDGTAPAGETWELNSDKWNDKFSQRRQKSVADFTRIPELILREDIGSNGGLPSRTGKGLALRQKAASRTAVTNDSESNGFTPVPMVTGDGFQTDSSYGVRKSSSTSCLQEQDNCSSSSIWPSSMWNLKPDLQALSTAAIGKPIFDGLPKPLTGRRNKAALD 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03962 351 MobiDBLite consensus disorder prediction 156 175 - -
Vivi4g03962 351 ProSiteProfiles LysM domain profile. 39 83 IPR018392 -
Vivi4g03962 351 MobiDBLite consensus disorder prediction 257 285 - -
Vivi4g03962 351 CDD LysM 47 83 IPR018392 -
Vivi4g03962 351 SMART LysM_2 40 84 IPR018392 -
Vivi4g03962 351 SUPERFAMILY LysM domain 39 84 IPR036779 -
Vivi4g03962 351 Gene3D LysM domain 25 90 IPR036779 -
Vivi4g03962 351 MobiDBLite consensus disorder prediction 87 115 - -
Vivi4g03962 351 PANTHER LYSM AND PUTATIVE PEPTIDOGLYCAN-BINDING DOMAIN-CONTAINING PROTEIN 13 274 IPR045030 -
Vivi4g03962 351 MobiDBLite consensus disorder prediction 93 115 - -
Vivi4g03962 351 Pfam LysM domain 41 84 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03962 Vivi-Chr4 160459765 160462486 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03962 - - gmx:100786352 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g03962 4 160459765 160462486 Vivi4g03962 4 160459765 160462486 ECH