Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01348 ATGGAAAGGGAAAAATGGAATGAGAATAATTCAAATGGGTATTTTGAAAATCAAGTTTTGTGTGATTATGATCGAGAATCAGTTACGATGTCTTCATCTCCACCTAGACTTGGTTACATTGAACATCATGTATCTAAATTTGATACATTGGTTGGTATTGCAATCAAATACGGTGTTGAGGTTACAGACATCAAAAGGATGAATAGCCTTGTTACTGATCATCAGATATTTGCACTTAAAACTGTTCAAATTCCATTACCTGGAAGACACCCTCCATCTCCTTGTTTATCAAATGGTTCCATTACTCCAGGAAATGGTAACTCTACTCACAGTCCACCTGACAATGCACACCGTGAACTGCTTGAATCATTTCAGTCCACAAAATTGAAGTCTTCTGATCGGAAGGTCTCTCCAGCCATGATCTCACTACAGGGTTATTATGGACTTCCCTCTAATCCATCAGAAAACGGTTCATCGTCCAAGAACTCGCCTAATTCTTACCGTCCCTTGAGTCGTCACCGAAAATCTAAAAGTTTGGTCAATGTTATTTTGGAAGAGATTATGGAAAAGGGTGATACTGCACCAGGTGCACAACCCTGGGAACTTAGCACTGTTAAATGGAATGACAAACTTGTCCAGAGGCGTCAGAAATCTGTAGCCGACTTTAGCAGAATACCAGAATTGATTCTGAGGGAGGATAATAGCAGCAGTGGTGGTCTTCCTTCAAGAACAGGAAAGGGTTTAGCTTTGAGACAGAAAGCAGCTAGCCGAACTCCATTGCCAACTGATTCTGAATCAAGTGGTTTGGTTCCTGGGCCAATGAGTATGGGGGATGATGTTCAAACTGATTGTTCATCTGGTGTAAAGAAATCATCCAGTACATCTTGTTTGCATGATCAGGATAATTGTAGCTCATCCATTTGGCCATCCAAAATGTGGAATTTGAAACCAGATTTACAGGCCCTTTCAACTGGAGCCATTAAAAAACCAATCTTTGATGGCTTACCTAAGCCACTAACTGGTAGAAGGAATAAAGCTGCACTTGATTAA 1050 0.4048 MEREKWNENNSNGYFENQVLCDYDRESVTMSSSPPRLGYIEHHVSKFDTLVGIAIKYGVEVTDIKRMNSLVTDHQIFALKTVQIPLPGRHPPSPCLSNGSITPGNGNSTHSPPDNAHRELLESFQSTKLKSSDRKVSPAMISLQGYYGLPSNPSENGSSSKNSPNSYRPLSRHRKSKSLVNVILEEIMEKGDTAPGAQPWELSTVKWNDKLVQRRQKSVADFSRIPELILREDNSSSGGLPSRTGKGLALRQKAASRTPLPTDSESSGLVPGPMSMGDDVQTDCSSGVKKSSSTSCLHDQDNCSSSIWPSKMWNLKPDLQALSTGAIKKPIFDGLPKPLTGRRNKAALD 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01348 349 CDD LysM 48 84 IPR018392 -
Mepo4g01348 349 PANTHER LYSM AND PUTATIVE PEPTIDOGLYCAN-BINDING DOMAIN-CONTAINING PROTEIN 6 272 IPR045030 -
Mepo4g01348 349 MobiDBLite consensus disorder prediction 147 174 - -
Mepo4g01348 349 SMART LysM_2 41 85 IPR018392 -
Mepo4g01348 349 MobiDBLite consensus disorder prediction 88 116 - -
Mepo4g01348 349 MobiDBLite consensus disorder prediction 147 167 - -
Mepo4g01348 349 SUPERFAMILY LysM domain 40 85 IPR036779 -
Mepo4g01348 349 Pfam LysM domain 42 85 IPR018392 -
Mepo4g01348 349 ProSiteProfiles LysM domain profile. 40 84 IPR018392 -
Mepo4g01348 349 MobiDBLite consensus disorder prediction 95 114 - -
Mepo4g01348 349 MobiDBLite consensus disorder prediction 232 298 - -
Mepo4g01348 349 MobiDBLite consensus disorder prediction 330 349 - -
Mepo4g01348 349 Gene3D LysM domain 26 91 IPR036779 -
Mepo4g01348 349 MobiDBLite consensus disorder prediction 279 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01348 Mepo-Chr4 17760834 17765026 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01348 - - pvu:PHAVU_003G005400g 467.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g01348 4 17760834 17765026 Mepo4g01348 4 17760834 17765026 ECH