Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1073 ATGTTCAACACCATCATCATGGCCTCCTCCAGAACTCTCGACTCCGTCACTTTCTACGTCTGCATGTTGCATGCAGGCCACTTTCCTGATAATTTCACTTTCCCTTTCCTCATCAAATCTTCTTCCGCCTCACCCACGAGCCTCCTTGGTCACCAACTCCACGCCCATGTCGTGAAGTTCGGGCTAGACCGCGACGTCTTCGTTGTGAACAACATGATCGCCTTGTATTCAAGTTTTCGAGAACTGCGATCTGCTCGGAAGGTGTTTGATGAAAGTTATAGCTTGGTTGATGTTGTTTCGTGGACTACATTGATCACTGGGTTCTCTAATTCGGGCCAGATTGATGAGGCCCGGAAAATTTTTGATCTAATGCCGCTGAAGAATACTGTTTCATGGAATGCAATGATCTCAGGGTATGCTGGGTCCAGTAGAATCAACGAAGCGCGAAAGCTGTTTGATGAAATGCCTGACCGAGACGCAGCATCATGGAGCGCAATGGTTTCGGGGTATTCGCAATTGGGGATGTGCAATGAGGCCTTGGATCTGTTCATGGAGATGGTGACTGGGGATAAGATGATTCCGAATGAAGCAGCATTGGTCAGTGCAGTTTCCGCATGCGCTCAACTGAGGGCGTTGGAGGAAGGGCGGTGGCTGCATAGCTACATCAAAGAGAAGAAGCTGAGGATTAATGTGACATTAGGTACAGTGCTGTTGGACATGTATGGAAAATGTGGGAGCATCCTTGATGCTGCAGGAGTCTTCAATTTGATGTCCGAAAGGAATGTGAATTCATGGAACTCAATGATAGCAGGGTTGGCCTTAAATGGATGTGGGAAGGAAGCATTGGCGTTGTTTTGGAAAATGCAGTTTGTGGGTCCTTCTCCTAACGCCATAACCTTCATTGCGTTGCTGACCGGGTGCAGCCACTCAGGGTTAATCACGGAGGGTCGATGGCTTTTCAGCATGATGACTCAAGTTTATGGCATAAAACCTCAGCTGAAGCACTACGGTTGCATGGTTGATCTGCTCGGCCGTGCGGGACTCGTTAAGGAAGCGCTAGATTTTGTGGAGAAAATGCCAATGAAGCCCCATTCTGAGTTATGGGGCGCCCTTGTTGGGGCGTGTAGAATTCATGGCCAAGTTGAGCTAGGTGAAGAGCTTGGCAAACGTCTCATTGATTTGGAGCCACACCATGGTGGGAGGTATGCTCTTTTGTGTAATATATTTGCAGCTGCTCAGAGATGGGATGATGTTGCCATGGTGAGAGATTTGGAGAAAGGCAGAAAGGTTTTAAAGAATCCAGGAAATAGTATAGTGGAAACATAG 1326 0.4781 MFNTIIMASSRTLDSVTFYVCMLHAGHFPDNFTFPFLIKSSSASPTSLLGHQLHAHVVKFGLDRDVFVVNNMIALYSSFRELRSARKVFDESYSLVDVVSWTTLITGFSNSGQIDEARKIFDLMPLKNTVSWNAMISGYAGSSRINEARKLFDEMPDRDAASWSAMVSGYSQLGMCNEALDLFMEMVTGDKMIPNEAALVSAVSACAQLRALEEGRWLHSYIKEKKLRINVTLGTVLLDMYGKCGSILDAAGVFNLMSERNVNSWNSMIAGLALNGCGKEALALFWKMQFVGPSPNAITFIALLTGCSHSGLITEGRWLFSMMTQVYGIKPQLKHYGCMVDLLGRAGLVKEALDFVEKMPMKPHSELWGALVGACRIHGQVELGEELGKRLIDLEPHHGGRYALLCNIFAAAQRWDDVAMVRDLEKGRKVLKNPGNSIVET* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1073 441 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 128 162 IPR002885 -
Vvi17g1073 441 Pfam PPR repeat 99 125 IPR002885 -
Vvi17g1073 441 Pfam PPR repeat 336 360 IPR002885 -
Vvi17g1073 441 Pfam PPR repeat 69 91 IPR002885 -
Vvi17g1073 441 Pfam PPR repeat 162 187 IPR002885 -
Vvi17g1073 441 Gene3D Tetratricopeptide repeat domain 9 126 IPR011990 GO:0005515
Vvi17g1073 441 Gene3D Tetratricopeptide repeat domain 127 233 IPR011990 GO:0005515
Vvi17g1073 441 Gene3D Tetratricopeptide repeat domain 235 440 IPR011990 GO:0005515
Vvi17g1073 441 FunFam Pentatricopeptide repeat-containing protein 129 232 - -
Vvi17g1073 441 NCBIfam pentatricopeptide repeat 162 188 IPR002885 -
Vvi17g1073 441 NCBIfam pentatricopeptide repeat 99 124 IPR002885 -
Vvi17g1073 441 NCBIfam pentatricopeptide repeat 130 158 IPR002885 -
Vvi17g1073 441 NCBIfam pentatricopeptide repeat 264 296 IPR002885 -
Vvi17g1073 441 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Vvi17g1073 441 FunFam Pentatricopeptide repeat-containing protein At3g26630, chloroplastic 9 128 - -
Vvi17g1073 441 Pfam PPR repeat family 260 308 IPR002885 -
Vvi17g1073 441 Pfam PPR repeat family 127 158 IPR002885 -
Vvi17g1073 441 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 127 IPR002885 -
Vvi17g1073 441 FunFam Pentatricopeptide repeat-containing protein 233 441 - -
Vvi17g1073 441 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 9 440 IPR046960 GO:0003723|GO:0009451
Vvi17g1073 441 Pfam E motif 378 440 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1073 Vvi-Chr17 14575746 14577071 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g1073 14 440 Glycoside Hydrolase AT3G49170 30.998 6.32e-70 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1073 - - vvi:100246088 889.412