Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01455 ATGATGGAAAGGGAAAATTGGAACGAGAATACCAATGGGTATTATGGGAATCAATTATTGTGTGATTATGATCGAGATTCAGTTACGATACATTCTTCTTTGTCACAATCTCCACCAAGAGGTTACATTGAACATCGTGTATCCAAATTTGATACTTTGGTTGGCATTGCAATCAAATACGGTGTTGAGGTTACAGACATCAAAAGGATGAATAGTCTTGTTACAGACCATCAGATATTTGCGCTTAAAACAGTTCAAATTCCATTACCTGGAAGGCATCCTCCATCTCCTATTTTATCAAATGGTTCAACTAATCCAGGAAATGGTAACTCCACTCACAGTCCACCTGATAATGCGAGCCGTGAACTGCTTGAATCATTTCAGTCCATAAAATTAAAGTCTCATGACCGGAAGGTTTCCCCTGCCATGAGCTCATTACAGGGCTATTATGGACTTCAAGCTGTCTCTAATTCTTCAGAAAATGGTTCATCCATGTCTGAACGGCCCCTGAGTCGTCACCGAAAATCGAGAAGTTTAGTCAATGTAATTTTGCAAGAGATTATGGATAAGGATGATACTTCATCAGAAACTGGTGAACTTAGCTCTGATAAATGGAATGACAAGTTTGCCCAGAGGCGTCAGAAATCCGTAGCTGACTTTACCAGGATACCGGAGTTGATTCTGAGGGAGGATAATGGCAGCAGTGGTGCTCTGCCTTCAAGAACAGGAAAGGGCTTAGCTTTGAGACAGAAAGCAGCTAGCCGAAATGCAGTGGCAAATGATTCTGAATCAAATGGTTCGCCTGTGGCAATGATGATTATGGGGGATGGTTTTCAAACTGATAGTTCATCTGGTGGTGTAAGGAAATCATCTAGTACATCGTGTTTGCAAGATCAGGATAACTGCAGCTCCTCATCCATTTGGCCATCCTCAATGTGGAAACCAGATTTACAGGCCCTTTCAACCGCAGCCATCGGAAAACCAATCTTTGATGGCTTGCCAAAGCCAATAACTAGTCGAAGGAATAAGGCTGCACTTGATTAA 1044 0.4186 MMERENWNENTNGYYGNQLLCDYDRDSVTIHSSLSQSPPRGYIEHRVSKFDTLVGIAIKYGVEVTDIKRMNSLVTDHQIFALKTVQIPLPGRHPPSPILSNGSTNPGNGNSTHSPPDNASRELLESFQSIKLKSHDRKVSPAMSSLQGYYGLQAVSNSSENGSSMSERPLSRHRKSRSLVNVILQEIMDKDDTSSETGELSSDKWNDKFAQRRQKSVADFTRIPELILREDNGSSGALPSRTGKGLALRQKAASRNAVANDSESNGSPVAMMIMGDGFQTDSSSGGVRKSSSTSCLQDQDNCSSSSIWPSSMWKPDLQALSTAAIGKPIFDGLPKPITSRRNKAALD 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01455 347 Pfam LysM domain 45 88 IPR018392 -
Trre1g01455 347 MobiDBLite consensus disorder prediction 276 311 - -
Trre1g01455 347 MobiDBLite consensus disorder prediction 328 347 - -
Trre1g01455 347 MobiDBLite consensus disorder prediction 157 176 - -
Trre1g01455 347 SUPERFAMILY LysM domain 43 88 IPR036779 -
Trre1g01455 347 PANTHER LYSM AND PUTATIVE PEPTIDOGLYCAN-BINDING DOMAIN-CONTAINING PROTEIN 31 264 IPR045030 -
Trre1g01455 347 Gene3D LysM domain 30 94 IPR036779 -
Trre1g01455 347 CDD LysM 43 87 IPR018392 -
Trre1g01455 347 MobiDBLite consensus disorder prediction 277 311 - -
Trre1g01455 347 SMART LysM_2 44 88 IPR018392 -
Trre1g01455 347 MobiDBLite consensus disorder prediction 91 119 - -
Trre1g01455 347 ProSiteProfiles LysM domain profile. 43 87 IPR018392 -
Trre1g01455 347 MobiDBLite consensus disorder prediction 97 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01455 Trre-Chr1 11040412 11042905 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01455 - - gmx:100786352 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g01455 1 11040412 11042905 Trre1g01455 1 11040412 11042905 ECH