Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0489 ATGTCGCCGTCAAATGGGGTTCAGAGCAACGGCGGCGGTGGTAATGGGTTGAATTATATTGAGCACCAGGTTTCAAAATTTGATACTCTTGCTGGTGTTGCCATTAAGTATGGTGTTGAGGTAGCTGACATCAAAAGGATGAATGTGTTAGCTTCTGATCTTCAAATGTTTGCCTTGAAGACATTGAGAATTCCATTACCTGGACGACATCCACCATCTCCCATTCCCGTTCTGCCTAATGGACATGCCAAGCAAGGAGATGATAGCTTTGAAAGGAAACTGCCACCCAGAGGTAAAGGTGGCATGAAGGAACCTCTTCAGTCCTTAAGACTGAAAGCACCCGGAGAGGAGATTTCTCCGGCTATGACCATTTTACGGAAATACTACGGACTCAAATCATCAAAGTCTAGAGATACATTTGAAGGAACAGAAATGAATGCTTATACATCTGCAAGTTCAGATCATTCCAAGTCAACAAATCTAGTCTATGATCTACTGACTGGGAATGATGCAGTGCCTGAGTATATGTCTCTTTCAGAAATTGGTGATGCAAGAGGTGAGAAGTATGATGATAAATCTGTCCGCAGACGTCAGAAAGCTGATGCTGATAGTGGAGGTGGTACACCTGAAAGGATTTTGAAAGAGGGAAATAGTAGTGGTGGTTCGAATGGTTTTTCTTCAACTGGAAAACCATTATCCGGGAGGACAAAATCAGCGAGTCGAGCAGTGCTGTTTCCTGAATCAGAATCAGGATGGTTAGATTCTCTTGCAATGGGGTTGGGAGAATCTATATTGACAGACGCATTTTCCGGAGTGCGAAAATCATCAAGCGCGTCGAGCCTAAGAGAGCAGGAGAGAAACAATTCAGCAGCGACAGTGTGGCCACCAAGATGGAGTTTGACACCAGACTTGCAAGCAGCCATTGGGAAACCTATCTTTGATGGCTTACCTATGCCAATAACTGGTCGCAGGGGCAAAACTGCCCTTGATTAG 993 0.4461 MSPSNGVQSNGGGGNGLNYIEHQVSKFDTLAGVAIKYGVEVADIKRMNVLASDLQMFALKTLRIPLPGRHPPSPIPVLPNGHAKQGDDSFERKLPPRGKGGMKEPLQSLRLKAPGEEISPAMTILRKYYGLKSSKSRDTFEGTEMNAYTSASSDHSKSTNLVYDLLTGNDAVPEYMSLSEIGDARGEKYDDKSVRRRQKADADSGGGTPERILKEGNSSGGSNGFSSTGKPLSGRTKSASRAVLFPESESGWLDSLAMGLGESILTDAFSGVRKSSSASSLREQERNNSAATVWPPRWSLTPDLQAAIGKPIFDGLPMPITGRRGKTALD* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0489 330 PANTHER PEPTIDOGLYCAN-BINDING LYSM DOMAIN-CONTAINING PROTEIN 10 330 - -
Lan10g0489 330 PANTHER LOC443603 PROTEIN-RELATED 10 330 IPR045030 -
Lan10g0489 330 CDD LysM 20 64 IPR018392 -
Lan10g0489 330 MobiDBLite consensus disorder prediction 187 204 - -
Lan10g0489 330 MobiDBLite consensus disorder prediction 187 236 - -
Lan10g0489 330 MobiDBLite consensus disorder prediction 275 294 - -
Lan10g0489 330 MobiDBLite consensus disorder prediction 311 330 - -
Lan10g0489 330 ProSiteProfiles LysM domain profile. 20 64 IPR018392 -
Lan10g0489 330 Gene3D LysM domain 15 71 IPR036779 -
Lan10g0489 330 SMART LysM_2 21 65 IPR018392 -
Lan10g0489 330 MobiDBLite consensus disorder prediction 215 235 - -
Lan10g0489 330 MobiDBLite consensus disorder prediction 70 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0489 Lan-Chr10 3794925 3798055 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0489 - - gmx:100786430 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0489 10 3794925 3798055 Lan10g0489 10 3794925 3798055 ECH
Lan10g0489 10 3794925 3798055 Lan3g0412 3 3543799 3547132 LSH