LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo7g00716	ATGACTTTCCACCGTGTAACAAAGCTCTTCTCATCAATCGCCTCCAACAACCGCCGCAACTTCTCATCAACCCCCTCCCCCGCGGTGTTCGTCGACAAAAGCACACGCGTGATCTGTCAAGGAATAACCGGAAAAAACGGAACGTTTCACACCGAACAAGCGATCGAATACGGAACGAATATGGTTGGCGGTGTTACTCCTAAGAAAGGTGGAACGGAACATTTAGGGCTTCCGGTTTTCAATTCTGTTGCGGAAGCGAAAACGGAGACGAAAGCGAATGCTTCTGTTATTTATGTTCCTCCTCCTTTTGCTGCTGCTGCTATTATGGAAGCGGTTGAGGCGGAGTTGGATCTTGTTGTTTGTATTACTGAAGGGATTCCTCAACATGATATGGTACGAGTTAAAGCAGCACTCAACAGACAGTCCAAAACTCGTTTGATAGGACCAAACTGTCCTGGTATCATCAAGCCCGGGGAATGTAAAATCGGAATCATGCCAGGTTACATTCATAAACCTGGACGCATCGGAATTGTTTCTCGTTCCGGCACTTTGACATATGAAGCGGTTTACCAAACAACTGCTGTTGGCCTTGGACAATCCACATGTGTGGGCATTGGAGGAGACCCCTTCAATGGAACAAACTTTGTTGACTGCCTTACAAAGTTCCTAGCAGATCCTCAAACAGAAGGTATTATTCTTATTGGAGAGATAGGAGGAACTGCAGAAGAGGACGCTGCTGCTCTAATTAAGGAAAGCGGGACTGAGAAGCCTGTTGTTGCATTTATTGCTGGATTAACTGCTCCCCCTGGCCGTCGTATGGGACACGCTGGAGCTATTGTGTCGGGTGGCAAGGGTACTGCTCAAGACAAAATCAGCACCCTCAGGGAAGCTGGAGTGACAGTTGTGGAGTCCCCAGCTAAAATTGGAGCTGCCATGTTTGAAATTTTCAAGCAGAAGGGCTTAGTGCAATAG	972	0.4743	MTFHRVTKLFSSIASNNRRNFSSTPSPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTNMVGGVTPKKGGTEHLGLPVFNSVAEAKTETKANASVIYVPPPFAAAAIMEAVEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVYQTTAVGLGQSTCVGIGGDPFNGTNFVDCLTKFLADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKISTLREAGVTVVESPAKIGAAMFEIFKQKGLVQ	323

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo7g00716	323	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	27	149	IPR036291	-
	Mepo7g00716	323	ProSitePatterns	ATP-citrate lyase / succinyl-CoA ligases family signature 1.	179	208	IPR033847	-
	Mepo7g00716	323	SMART	CoA_binding_2	30	126	IPR003781	-
	Mepo7g00716	323	ProSitePatterns	ATP-citrate lyase / succinyl-CoA ligases family active site.	264	277	IPR017440	-
	Mepo7g00716	323	PRINTS	Succinyl-CoA synthase signature	235	248	-	-
	Mepo7g00716	323	PRINTS	Succinyl-CoA synthase signature	204	222	-	-
	Mepo7g00716	323	PRINTS	Succinyl-CoA synthase signature	268	285	-	-
	Mepo7g00716	323	PRINTS	Succinyl-CoA synthase signature	108	125	-	-
	Mepo7g00716	323	PANTHER	SUCCINYL-COA LIGASE SUBUNIT ALPHA	15	321	-	-
	Mepo7g00716	323	Hamap	Succinate--CoA ligase [ADP-forming] subunit alpha [sucD].	27	316	IPR005810	GO:0003824
	Mepo7g00716	323	FunFam	Succinate--CoA ligase [ADP-forming] subunit alpha	26	147	-	-
	Mepo7g00716	323	Pfam	CoA binding domain	32	125	IPR003781	-
	Mepo7g00716	323	FunFam	Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial	148	321	-	-
	Mepo7g00716	323	Pfam	CoA-ligase	178	299	IPR005811	GO:0003824
	Mepo7g00716	323	NCBIfam	succinate--CoA ligase subunit alpha	30	315	IPR005810	GO:0003824
	Mepo7g00716	323	Gene3D	-	148	321	IPR016102	-
	Mepo7g00716	323	SUPERFAMILY	Succinyl-CoA synthetase domains	150	317	IPR016102	-
	Mepo7g00716	323	PIRSF	SucCS_alpha	25	319	IPR005810	GO:0003824
	Mepo7g00716	323	Gene3D	-	28	147	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo7g00716	116	318	Acyl Lipid Metabolism Gene Families	AT3G06650	32.243	1.07e-22	96.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo7g00716	K01899		-	gmx:100815484	570.852

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mepo7g00716	7	11550221	11555554	Mepo7g00716	7	11550221	11555554	ECH