Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03669 ATGAGTTTCCAACGCGCAACCAAACTGTTCTCATCCATCGCATCGCGCCGCCAACACCTCCGAAACCTTTCCTCAACGCCGTCGTCACCGGCGGTGTTCGTCGACAAGAGCACACGCGTGATCTGTCAAGGAATCACCGGAAAGAATGGAACGTTTCACACTGAGCAAGCAATCGAGTACGGAACGAATATGGTTGGTGGTGTTACTCCGAAGAAAGGCGGAACCGAACATTTAGGGCTTCCGGTTTTCAATTCCGTTGCGGAAGCGAAAGCTGAGACTAAAGCTAATGCTTCTGTTATTTATGTTCCTCCTCCTTTTGCTGCTGCTGCGATTTTGGAAGCGTTGGAAGCTGAGTTGGATCTTGTTGTTTGCATCACGGAAGGGATTCCTCAGCATGATATGGTACGAGTTAAAGCAGCAATTAACAGACAGTCCAAAACTCGTTTGATTGGACCAAACTGCCCTGGTATCATCAAGCCTGGGGAATGTAAAATTGGAATCATGCCTGGTTACATCCACAAACCTGGGCGCATTGGAATTGTTTCTCGTTCTGGCACTTTGACATATGAAGCAGTTTTCCAAACAACTGCTGTTGGCCTTGGACAATCCACTTGTGTGGGTATAGGAGGAGATCCCTTCAATGGAACAAACTTTGTTGATTGCCTAACAAAGTTCCTAGCGGATCCTCAGACAGAAGGTATCGTTCTCATAGGAGAGATAGGAGGAACTGCAGAAGAGGATGCTGCTGCACTGATTAAGGAAAGCGGGACTGAGAAGCCCATCGTTGCATTTATTGCTGGATTAACTGCTCCCCCTGGCCGTCGTATGGGTCATGCTGGAGCTATTGTGTCGGGTGGCAAGGGTACTGCTCAAGACAAAATCAGCACTCTTAGGGATGCTGGAGTCACAAAGGGGTTGGTGCAATAG 927 0.4833 MSFQRATKLFSSIASRRQHLRNLSSTPSSPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTNMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAILEALEAELDLVVCITEGIPQHDMVRVKAAINRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLTKFLADPQTEGIVLIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKISTLRDAGVTKGLVQ 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03669 308 Pfam CoA binding domain 35 128 IPR003781 -
Vifa1g03669 308 PRINTS Succinyl-CoA synthase signature 111 128 - -
Vifa1g03669 308 PRINTS Succinyl-CoA synthase signature 271 288 - -
Vifa1g03669 308 PRINTS Succinyl-CoA synthase signature 238 251 - -
Vifa1g03669 308 PRINTS Succinyl-CoA synthase signature 207 225 - -
Vifa1g03669 308 Gene3D - 31 150 - -
Vifa1g03669 308 PANTHER SUCCINYL-COA LIGASE SUBUNIT ALPHA 12 303 - -
Vifa1g03669 308 PIRSF SucCS_alpha 28 306 IPR005810 GO:0003824
Vifa1g03669 308 SUPERFAMILY Succinyl-CoA synthetase domains 153 303 IPR016102 -
Vifa1g03669 308 Hamap Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 30 307 IPR005810 GO:0003824
Vifa1g03669 308 Gene3D - 151 305 IPR016102 -
Vifa1g03669 308 SMART CoA_binding_2 33 129 IPR003781 -
Vifa1g03669 308 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 182 211 IPR033847 -
Vifa1g03669 308 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 30 152 IPR036291 -
Vifa1g03669 308 FunFam Succinate--CoA ligase [ADP-forming] subunit alpha 29 150 - -
Vifa1g03669 308 FunFam Succinate--CoA ligase [ADP-forming] subunit alpha 151 306 - -
Vifa1g03669 308 Pfam CoA-ligase 181 302 IPR005811 GO:0003824
Vifa1g03669 308 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 267 280 IPR017440 -
Vifa1g03669 308 NCBIfam succinate--CoA ligase subunit alpha 33 303 IPR005810 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03669 Vifa-Chr1 567584859 567589008 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03669 119 303 Acyl Lipid Metabolism Gene Families AT3G06650 33.163 6.75e-22 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03669 K01899 - gmx:100815484 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03669 1 567584859 567589008 Vifa1g03669 1 567584859 567589008 ECH