Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g1047 ATGGGTCGCCGAGCTGTAGCGAGGTTGATAAGTTCAATTGCATCACGCGCCAAATCATCTTCATCGCCGTCACTTCCTTCCTCTTCCACTCAGATCCGCCATTTGACGTCGGCGCCACCCTCTCCTGCCGTTTTCGTTGACAAGACCACACGCGTCATCTGCCAAGGCATCACCGGCAAGAATGGCACTTTCCACACCGAGCAGGCCATCGAATACGGAACCAAGATGGTGGGTGGTGTAACCCCAAAGAAGGGTGGAACTGAACACTTGGGACTTCCTGTGTTTAACACTGTTGCTGAAGCAAAAGCTGAAACAAAGGCAAATGCTTCAGTCATCTATGTTCCTCCACCATTTGCTGCAGCGGCCATTTTGGAGGCAGTGGAAGCTGAGTTGGATCTTGTTGTCTGTATCACTGAAGGGATTCCTCAGCATGATATGGTACGAGTGAAGGCTGCTCTTAATAGACAGTCCAAGACTCGTCTGATTGGACCAAACTGCCCCGGTATCATCAAGCCAGGTGAATGTAAAATAGGAATCATGCCAGGTTACATTCATAAACCTGGTCGTGTAGGAATTGTTTCTCGTTCTGGCACCTTGACATATGAAGCGGTTTTCCAAACGACTGCTGTTGGACTTGGACAATCCACTTGTGTGGGCATAGGTGGAGATCCTTTTAATGGAACAAACTTTGTGGATTGTGTTGAGCGATTCCTGGTAGATCCACAGACTGAAGGCATCATTCTCATAGGAGAGATAGGGGGAACTGCAGAAGAAGATGCTGCTGCACTAATTAAGGAAAGTGGGACTGAGAAGCCTATTGTTGCATTTATTGCTGGATTAACGGCTCCCCCTGGCCGTCGAATGGGTCATGCTGGAGCCATTGTGTCAGGTGGCAAGGGTACTGCTCAGGACAAAATTAAAACTCTGAGGGAAGCTGGGGTCACTGTAGTGGAGTCACCTGCTAAAATTGGAGCTGCCATTCTTGATGTTTTCAAGCAGAGGGGCTTGGTCCAATAG 1017 0.4887 MGRRAVARLISSIASRAKSSSSPSLPSSSTQIRHLTSAPPSPAVFVDKTTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPFAAAAILEAVEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVERFLVDPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAILDVFKQRGLVQ 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g1047 338 SUPERFAMILY Succinyl-CoA synthetase domains 165 333 IPR016102 -
Lele47g1047 338 PRINTS Succinyl-CoA synthase signature 250 263 - -
Lele47g1047 338 PRINTS Succinyl-CoA synthase signature 123 140 - -
Lele47g1047 338 PRINTS Succinyl-CoA synthase signature 283 300 - -
Lele47g1047 338 PRINTS Succinyl-CoA synthase signature 219 237 - -
Lele47g1047 338 Hamap Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 42 331 IPR005810 GO:0003824
Lele47g1047 338 Pfam CoA binding domain 47 140 IPR003781 -
Lele47g1047 338 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 279 292 IPR017440 -
Lele47g1047 338 FunFam Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial 163 336 - -
Lele47g1047 338 MobiDBLite consensus disorder prediction 17 41 - -
Lele47g1047 338 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 194 223 IPR033847 -
Lele47g1047 338 Gene3D - 163 336 IPR016102 -
Lele47g1047 338 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 43 164 IPR036291 -
Lele47g1047 338 PANTHER SUCCINYL-COA LIGASE SUBUNIT ALPHA 28 336 - -
Lele47g1047 338 Gene3D - 43 162 - -
Lele47g1047 338 FunFam Succinate--CoA ligase [ADP-forming] subunit alpha 41 162 - -
Lele47g1047 338 MobiDBLite consensus disorder prediction 17 37 - -
Lele47g1047 338 SMART CoA_binding_2 45 141 IPR003781 -
Lele47g1047 338 Pfam CoA-ligase 193 314 IPR005811 GO:0003824
Lele47g1047 338 PIRSF SucCS_alpha 41 334 IPR005810 GO:0003824
Lele47g1047 338 TIGRFAM sucCoAalpha: succinate-CoA ligase, alpha subunit 45 330 IPR005810 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g1047 Lele-ChrLele47 16260618 16265252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g1047 131 333 Acyl Lipid Metabolism Gene Families AT3G06650 32.710 6.35e-23 97.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele47g1047 47 16260618 16265252 Lele47g1047 47 16260618 16265252 ECH
Lele45g0347 45 2756215 2762786 Lele47g1047 47 16260618 16265252 hybridization
Lele46g0376 46 2514528 2519047 Lele47g1047 47 16260618 16265252 hybridization