Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0509 ATGGGTCGCCGAGCTGTAGCGAAGTTGATCAGCTCGATTGCTTCGCGCGCCAAATCATCTTCATCGCCGTCACTTTTTTCTTCTTCTTCCACTCAGATCCGCCAGTTCACGTCGGCGCCACCCTCTCCTGCCGTTTTCGTTGACAAGATCACACGCGTCATCTGCCAAGGCATCACCGGCAAGAATGGCACTTTCCACACCGAGCAAGCCATCGAATACGGAACCAAGATGGTGGGTGGTGTAACACCAAAGAAGGGTGGCACTGAACACTTGGGACTTCCTGTGTTTAACACTGTTGCTGAAGCAAAAGCTGAAACAAAGGCAAATGCTTCAGTCATCTATGTTCCTCCACCATTTGCTGCGGCTGCCATTTTGGAGGCAGTGGAAGCTGAGTTGGATCTTGTTGTCTGTATCACTGAAGGAATTCCTCAGCATGATATGGTACGGGTGAAAGCTGCTCTTAATAGACAGTCCAAGACTCGTCTGATTGGACCAAACTGCCCTGGCATCATCAAGCCTGGTGAATGTAAAATTGGAATAATGCCAGGTTACATTCATAAACCTGGTCGTATAGGAATTGTTTCTCGTTCTGGCACCTTGACATATGAAGCGGTTTTCCAAACAACAGCTGTGGGACTTGGACAATCCACTTGTGTGGGCATAGGTGGAGATCCTTTTAATGGGACAAACTTCGTTGATTGTGTGGAGCGTTTCCTGGTAGATCCACAGACTGAAGGCATCATTCTCATTGGAGAGATAGGGGGAACTGCGGAAGAAGATGCTGCTGCACTAATTAAGGAAAGTGGGACTGAGAAGCCTATTGTTGCATTTATTGCTGGATTAACAGCTCCCCCAGGCCGTCGTATGGGTCATGCTGGAGCCATTGTATCAGGTGGCAAGGGTACTGCTCAGGACAAAATTAAGACACTGAGGGAAGCTGGGGTCACTGTAGTGGAGTCGCCGGCTAAAATTGGAGCTGCCATTCTTGATGTTTTCAAGCAGAGGGGCTTGGTCCAGTAG 1020 0.4892 MGRRAVAKLISSIASRAKSSSSPSLFSSSSTQIRQFTSAPPSPAVFVDKITRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPFAAAAILEAVEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVERFLVDPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAILDVFKQRGLVQ 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0509 339 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 44 165 IPR036291 -
Acco01g0509 339 FunFam Succinate--CoA ligase [ADP-forming] subunit alpha 42 163 - -
Acco01g0509 339 Pfam CoA binding domain 48 141 IPR003781 -
Acco01g0509 339 SUPERFAMILY Succinyl-CoA synthetase domains 166 334 IPR016102 -
Acco01g0509 339 PIRSF SucCS_alpha 42 335 IPR005810 GO:0003824
Acco01g0509 339 Gene3D - 44 163 - -
Acco01g0509 339 NCBIfam succinate--CoA ligase subunit alpha 46 331 IPR005810 GO:0003824
Acco01g0509 339 Gene3D - 164 337 IPR016102 -
Acco01g0509 339 Hamap Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 43 332 IPR005810 GO:0003824
Acco01g0509 339 PANTHER SUCCINYL-COA LIGASE SUBUNIT ALPHA 25 337 - -
Acco01g0509 339 SMART CoA_binding_2 46 142 IPR003781 -
Acco01g0509 339 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 280 293 IPR017440 -
Acco01g0509 339 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 195 224 IPR033847 -
Acco01g0509 339 PRINTS Succinyl-CoA synthase signature 124 141 - -
Acco01g0509 339 PRINTS Succinyl-CoA synthase signature 220 238 - -
Acco01g0509 339 PRINTS Succinyl-CoA synthase signature 284 301 - -
Acco01g0509 339 PRINTS Succinyl-CoA synthase signature 251 264 - -
Acco01g0509 339 FunFam Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial 164 337 - -
Acco01g0509 339 Pfam CoA-ligase 194 315 IPR005811 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0509 Acco-ChrAcco01 6156510 6162471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0509 132 334 Acyl Lipid Metabolism Gene Families AT3G06650 32.243 9.93e-23 97.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g0509 01 6156510 6162471 Acco01g0509 01 6156510 6162471 ECH