Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2011 ATGACTTTCCACCGCGTAACAAAACTGTTCTCATCAATCGCCTCCAACAACCGCCGCAACTTCTCATCAACCCCCTCTCCGGCGGTGTTCGTCGACAAAAGCACACGCGTGATCTGTCAAGGAATAACAGGCAAAAACGGAACGTTTCACACCGAACAAGCGATCGAATATGGAACGAATATGGTTGGTGGTGTTACTCCGAAGAAAGGTGGAACGGAACATTTAGGGCTTCCGGTTTTCAATTCTGTTGCGGAAGCGAAAACTGAAACGAAAGCGAATGCTTCTGTTATTTATGTTCCTCCTCCTTTTGCTGCTGCTGCTATTATGGAAGCGGTTGAAGCTGAGTTGGATCTTGTTGTTTGTATTACTGAAGGGATTCCTCAACATGATATGGTACGAGTTAAAGCAGCACTCAACAGACAGTCCAAAACTCGATTGATAGGACCAAACTGTCCTGGTATCATCAAGCCTGGGGAATGTAAAATCGGTATCATGCCAGGTTACATTCATAAACCTGGACGCATAGGAATTGTTTCTCGTTCCGGAACTTTGACATATGAAGCGGTTTACCAAACAACTGCTGTTGGCCTTGGACAATCCACATGTGTGGGTATTGGAGGAGATCCCTTCAATGGAACAAACTTTGTTGACTGTCTTACAAAGTTCCTAGCAGATCCTCAAACAGAAGGTATCATTCTTATAGGAGAGATAGGAGGAACTGCAGAAGAGGATGCTGCTGCTCTAATTAAGGAAAGTGGGACTGAGAAGCCTGTTGTTGCATTTATTGCTGGATTAACTGCTCCCCCTGGCCGTCGTATGGGACACGCTGGAGCTATTGTGTCGGGTGGCAAGGGTACTGCTCAAGACAAAATCAGCACCCTCAGGGAAGCTGGAGTGACAGTTGTGGAGTCCCCAGCTAAAATTGGAGCTGCCATGTTTGAAATTTTCAAGCAGAAGGGCTTAGTGCAATAG 972 0.4609 MTFHRVTKLFSSIASNNRRNFSSTPSPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTNMVGGVTPKKGGTEHLGLPVFNSVAEAKTETKANASVIYVPPPFAAAAIMEAVEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVYQTTAVGLGQSTCVGIGGDPFNGTNFVDCLTKFLADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKISTLREAGVTVVESPAKIGAAMFEIFKQKGLVQ* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2011 323 PRINTS Succinyl-CoA synthase signature 108 125 - -
Mtr6g2011 323 PRINTS Succinyl-CoA synthase signature 204 222 - -
Mtr6g2011 323 PRINTS Succinyl-CoA synthase signature 235 248 - -
Mtr6g2011 323 PRINTS Succinyl-CoA synthase signature 268 285 - -
Mtr6g2011 323 PANTHER SUCCINATE--COA LIGASE [ADP-FORMING] SUBUNIT ALPHA-1, MITOCHONDRIAL 8 322 - -
Mtr6g2011 323 SMART CoA_binding_2 30 126 IPR003781 -
Mtr6g2011 323 Gene3D - 148 321 IPR016102 -
Mtr6g2011 323 PANTHER SUCCINYL-COA LIGASE SUBUNIT ALPHA 8 322 - -
Mtr6g2011 323 Pfam CoA binding domain 32 125 IPR003781 -
Mtr6g2011 323 Hamap Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 27 316 IPR005810 GO:0003824
Mtr6g2011 323 Pfam CoA-ligase 178 299 IPR005811 GO:0003824
Mtr6g2011 323 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 179 208 IPR033847 -
Mtr6g2011 323 PIRSF SucCS_alpha 25 319 IPR005810 GO:0003824
Mtr6g2011 323 SUPERFAMILY Succinyl-CoA synthetase domains 150 317 IPR016102 -
Mtr6g2011 323 Gene3D - 28 147 - -
Mtr6g2011 323 TIGRFAM sucCoAalpha: succinate-CoA ligase, alpha subunit 30 315 IPR005810 GO:0003824
Mtr6g2011 323 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 264 277 IPR017440 -
Mtr6g2011 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 27 149 IPR036291 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2011 116 318 Acyl Lipid Metabolism Gene Families AT3G06650 32.243 1.07e-22 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2011 K01899 - gmx:100815484 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g2011 6 36567367 36572476 Mtr6g2011 6 36567367 36572476 ECH