Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi1g1331 Acco04g1857 . Accr8g00841 . Adu10g00727 . . . . . . Ahy20g1008 . Aip10g01067 . . . Amo20g0935 . . Arst10g00926 . . . Bisa08g2701 . Bva06g01768 . . . . . Dere03g0111 . . Dod04g0588 Enph6g0117 . Glsi02g0111 . . . . Gma18g00091 . . . . . . . . . . . . . . . . Lapu6g00103 . Lasa5g02646 . Lele21g1314 Lele22g1311 Lele23g0717 Lele24g1224 . . . . . . . . Mepo3g06247 . Mesa9g03358 . Mibi09g0843 . Mtr3g2832 . . . Phco2g02951 . Prci4g2099 . . . Pste7g02372 . . . . . Pumo1g00426 . Pvu1g2672 . Rops11g03750 . Seca6g01746 . . . . . Sto3g2915 . Tpr2g4702 . Trre5g03157 . . . Vian2g03160 . . . . . Viun1g03427 . Vivi3g03321 . . .
Vvi1g1332 Acco04g1854 . Accr8g00842 . Adu10g00726 . . . . . . Ahy20g1006 . Aip10g01066 . . . Amo20g0931 . . Arst10g00925 . . . Bisa08g2702 . Bva06g01767 . . . . . Dere03g0110 . . Dod04g0589 Enph6g0114 . Glsi02g0110 . . . . Gma18g00090 . . . . . . . . . . . . . . . . Lapu6g00102 . Lasa5g02644 . Lele21g1313 Lele22g1310 Lele23g0718 Lele24g1225 . . . . . . . . Mepo3g06246 . Mesa9g03704 . Mibi09g0844 . Mtr3g2831 . . . Phco2g02952 . Prci4g2098 . Psa5g2200 . Pste7g02373 . . . . . Pumo1g00427 . Pvu1g2673 . Rops11g03749 . Seca6g01745 . Spst1g01919 . . . Sto3g2912 . Tpr2g4700 . Trre5g03153 . . . Vian2g03161 . Vifa2g02481 . Vimu6g01542 . Viun1g03428 . Vivi3g03322 . . .
Vvi1g1333 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1334 Acco04g1853 . Accr8g00844 . . Adu06g02415 . . . Aev03g2480 . Ahy13g4452 . Aip03g04937 . . . Amo13g5547 . . . Arst6g03102 . . Bisa08g2703 . Bva06g01766 . . . . . Dere03g0109 . . Dod04g0591 Enph6g0113 . Glsi02g0108 . . . Gma08g00945 Gma18g00089 . . . . . . . . . . . . . . . . . . Lasa5g02639 . Lele21g1309 Lele22g1307 Lele23g0724 . . . . . . . . Mal7g4157 . . . . Mibi09g0848 . . Mtr8g2776 . . Phco2g02953 . Prci4g2096 . Psa5g2202 Psa7g1834 Pste7g02375 . . . . . Pumo1g00428 . Pvu1g2674 Pvu8g1545 Rops11g03748 Rops8g02265 Seca6g01743 Seca2g03044 Spst1g01918 . . . Sto3g2909 . . Tpr3g1328 . . . Tsu02g01226 Vian2g03162 Vian2g01360 Vifa2g02480 . Vimu6g01541 Vimu6g03854 Viun1g03429 Viun5g02197 Vivi3g03324 . . .
Vvi1g1335 . . . . . . . . . Aev03g2481 . Ahy13g4453 . Aip03g04938 . . . Amo13g5546 . . . . . . . . . . . . . . . . . Dod04g0592 . . . . . . . Gma18g00088 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal7g4159 . . . . . . Mtr3g2830 Mtr8g2778 . . . . . . Psa5g2203 Psa7g1833 . . . . . . . . . . . . . . . . . . . . Tpr2g4697 . . . . Tsu02g01225 . . . . . . . . . . . .
Vvi1g1336 . . . . . Adu06g02413 . . . . . . . . . . . . . . Arst10g00924 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu6g00100 . Lasa5g02638 . . . . . . . . . . . . . Mepo3g06243 . . . . . . . . . . . . . . . Pste7g02376 . . . . . . . Pvu1g2675 Pvu8g1546 Rops11g03747 Rops8g02267 . . . . . . . . . . . . . . Vian2g03163 Vian2g01368 Vifa2g02479 Vifa1g05080 Vimu6g01540 Vimu6g03848 . Viun5g02212 . . . .
Vvi1g1337 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1338 . . . . . Adu06g02412 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa5g2209 . . . . . . . . . . Pvu8g1547 . Rops8g02266 . . . . . . . . . . . . . . . Vian2g01367 . Vifa1g05082 . Vimu6g03847 . Viun5g02211 . . . .
Vvi1g1339 . . . . Adu03g04519 . . . . . . . . . . . . . . . Arst3g05977 . . . Bisa07g0377 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu3g02591 . Lasa7g03920 . Lele13g0316 Lele14g0262 Lele15g2154 Lele16g2174 . . . . . Lja4g1065 . Mal7g4167 Mepo2g03847 . Mesa13g01294 . . . . Mtr8g2784 Phac2g02748 . Phco4g02044 . . . . . Pste3g02712 . . . . . . . Pvu2g1807 . . . . . Spst3g00132 . . . . . . Tpr3g1323 Trre7g04505 . . Tsu02g01220 . . . . Vimu11g01833 . . . Vivi5g05603 . . .
Vvi1g1340 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi1g1331 Chr1 19533284 19534903 -
Acco Acco04g1857 Chr04 30693516 30694592 +
Accr Accr8g00841 Chr8 18834005 18835019 -
Adu Adu10g00727 Chr10 8949851 8950684 +
Ahy Ahy20g1008 Chr20 14859364 14860646 +
Aip Aip10g01067 Chr10 14147003 14148316 +
Amo Amo20g0935 Chr20 15614858 15615716 +
Arst Arst10g00926 Chr10 8596986 8598245 +
Bisa Bisa08g2701 Chr08 62325671 62326762 -
Bva Bva06g01768 Chr06 12246599 12247288 +
Dere Dere03g0111 Chr03 4487185 4489796 +
Dod Dod04g0588 Chr04 8416177 8417992 -
Enph Enph6g0117 Chr6 4298250 4299961 +
Glsi Glsi02g0111 Chr02 760408 761548 +
Gma Gma18g00091 Chr18 720799 721884 +
Lapu Lapu6g00103 Chr6 788077 789012 +
Lasa Lasa5g02646 Chr5 495352215 495352928 +
Lele Lele21g1314 Chr21 21285582 21286690 +
Lele Lele22g1311 Chr22 18600101 18601184 +
Lele Lele23g0717 Chr23 5741753 5742846 -
Lele Lele24g1224 Chr24 16205415 16206501 -
Mepo Mepo3g06247 Chr3 76619336 76621039 +
Mesa Mesa9g03358 Chr9 64387275 64388500 -
Mibi Mibi09g0843 Chr09 12771789 12772891 -
Mtr Mtr3g2832 Chr3 42308386 42310143 +
Phco Phco2g02951 Chr2 58413576 58415120 -
Prci Prci4g2099 Chr4 32617442 32618863 +
Pste Pste7g02372 Chr7 22470408 22471907 -
Pumo Pumo1g00426 Chr1 5935454 5936589 -
Pvu Pvu1g2672 Chr1 51449935 51451731 -
Rops Rops11g03750 Chr11 71189794 71190991 +
Seca Seca6g01746 Chr6 72338180 72339265 +
Sto Sto3g2915 Chr3 33830947 33833302 +
Tpr Tpr2g4702 Chr2 52406928 52411965 +
Trre Trre5g03157 Chr5 27030346 27031414 +
Vian Vian2g03160 Chr2 52101113 52101600 -
Viun Viun1g03427 Chr1 41326890 41328477 -
Vivi Vivi3g03321 Chr3 56062896 56063612 -
Vvi Vvi1g1332 Chr1 19544341 19546424 +
Acco Acco04g1854 Chr04 30622898 30626632 +
Accr Accr8g00842 Chr8 18870539 18872985 +
Adu Adu10g00726 Chr10 8894097 8897570 -
Ahy Ahy20g1006 Chr20 14749999 14753603 -
Aip Aip10g01066 Chr10 14051601 14056434 -
Amo Amo20g0931 Chr20 15509190 15512789 -
Arst Arst10g00925 Chr10 8541818 8545151 -
Bisa Bisa08g2702 Chr08 62367761 62387956 +
Bva Bva06g01767 Chr06 12240431 12243105 -
Dere Dere03g0110 Chr03 4479260 4481766 -
Dod Dod04g0589 Chr04 8428341 8431370 +
Enph Enph6g0114 Chr6 4278329 4281428 -
Glsi Glsi02g0110 Chr02 753885 756822 -
Gma Gma18g00090 Chr18 711142 714001 -
Lapu Lapu6g00102 Chr6 778987 781771 -
Lasa Lasa5g02644 Chr5 495126916 495128918 -
Lele Lele21g1313 Chr21 21275219 21277845 -
Lele Lele22g1310 Chr22 18585362 18587754 -
Lele Lele23g0718 Chr23 5753042 5755397 +
Lele Lele24g1225 Chr24 16220300 16222684 +
Mepo Mepo3g06246 Chr3 76606591 76609330 -
Mesa Mesa9g03704 Chr9 68655335 68657768 -
Mibi Mibi09g0844 Chr09 12787051 12789605 +
Mtr Mtr3g2831 Chr3 42281905 42295472 -
Phco Phco2g02952 Chr2 58428657 58430904 +
Prci Prci4g2098 Chr4 32603498 32606274 -
Psa Psa5g2200 Chr5 173397095 173399061 +
Pste Pste7g02373 Chr7 22490154 22492577 +
Pumo Pumo1g00427 Chr1 5942339 5945231 +
Pvu Pvu1g2673 Chr1 51460211 51463230 +
Rops Rops11g03749 Chr11 71177650 71180780 -
Seca Seca6g01745 Chr6 72284572 72287106 -
Spst Spst1g01919 Chr1 27428321 27430582 -
Sto Sto3g2912 Chr3 33800349 33804026 -
Tpr Tpr2g4700 Chr2 52369470 52372112 -
Trre Trre5g03153 Chr5 26919540 26921863 -
Vian Vian2g03161 Chr2 52105279 52107566 +
Vifa Vifa2g02481 Chr2 650975676 650977730 -
Vimu Vimu6g01542 Chr6 14447237 14449096 -
Viun Viun1g03428 Chr1 41332486 41335215 +
Vivi Vivi3g03322 Chr3 56092087 56094401 +
Vvi Vvi1g1333 Chr1 19548426 19549916 +
Vvi Vvi1g1334 Chr1 19566166 19569048 +
Acco Acco04g1853 Chr04 30584044 30587187 -
Accr Accr8g00844 Chr8 18965683 18968807 +
Adu Adu06g02415 Chr06 97989701 97992894 +
Aev Aev03g2480 Chr03 25824801 25827511 +
Ahy Ahy13g4452 Chr13 144655516 144658982 +
Aip Aip03g04937 Chr03 133990647 133994046 +
Amo Amo13g5547 Chr13 156980871 156984335 -
Arst Arst6g03102 Chr6 97186600 97189890 +
Bisa Bisa08g2703 Chr08 62397236 62400276 +
Bva Bva06g01766 Chr06 12238552 12239271 -
Dere Dere03g0109 Chr03 4466747 4469584 -
Dod Dod04g0591 Chr04 8450684 8454393 +
Enph Enph6g0113 Chr6 4199702 4203204 -
Glsi Glsi02g0108 Chr02 747036 749967 -
Gma Gma08g00945 Chr08 7969141 7972034 +
Gma Gma18g00089 Chr18 701138 703906 -
Lasa Lasa5g02639 Chr5 494231022 494233208 -
Lele Lele21g1309 Chr21 21248579 21251432 -
Lele Lele22g1307 Chr22 18550895 18553849 -
Lele Lele23g0724 Chr23 5783163 5785986 +
Mal Mal7g4157 Chr7 108379900 108382563 +
Mibi Mibi09g0848 Chr09 12849233 12852172 +
Mtr Mtr8g2776 Chr8 38437535 38440725 +
Phco Phco2g02953 Chr2 58436763 58439368 +
Prci Prci4g2096 Chr4 32564743 32568285 -
Psa Psa5g2202 Chr5 173485940 173488558 +
Psa Psa7g1834 Chr7 132691549 132694007 -
Pste Pste7g02375 Chr7 22505752 22508644 +
Pumo Pumo1g00428 Chr1 5953669 5957141 +
Pvu Pvu1g2674 Chr1 51470071 51473169 +
Pvu Pvu8g1545 Chr8 30562209 30565065 +
Rops Rops11g03748 Chr11 71169163 71172134 -
Rops Rops8g02265 Chr8 52158163 52160792 +
Seca Seca6g01743 Chr6 72205458 72208756 -
Seca Seca2g03044 Chr2 91044848 91047627 +
Spst Spst1g01918 Chr1 27420994 27423553 -
Sto Sto3g2909 Chr3 33769897 33772883 -
Tpr Tpr3g1328 Chr3 11758931 11766056 -
Tsu Tsu02g01226 Chr02 10372864 10375992 -
Vian Vian2g03162 Chr2 52115505 52117892 +
Vian Vian2g01360 Chr2 28008729 28012824 +
Vifa Vifa2g02480 Chr2 650395393 650397542 -
Vimu Vimu6g01541 Chr6 14438626 14442217 -
Vimu Vimu6g03854 Chr6 37425071 37429867 -
Viun Viun1g03429 Chr1 41339698 41342604 +
Viun Viun5g02197 Chr5 28119222 28122326 +
Vivi Vivi3g03324 Chr3 56124366 56126721 +
Vvi Vvi1g1335 Chr1 19570005 19571893 +
Aev Aev03g2481 Chr03 25828750 25831111 +
Ahy Ahy13g4453 Chr13 144659831 144663353 +
Aip Aip03g04938 Chr03 133994882 134002262 +
Amo Amo13g5546 Chr13 156975262 156979166 -
Dod Dod04g0592 Chr04 8460663 8463798 +
Gma Gma18g00088 Chr18 697217 699897 -
Mal Mal7g4159 Chr7 108393700 108397615 +
Mtr Mtr3g2830 Chr3 42267666 42276512 -
Mtr Mtr8g2778 Chr8 38449868 38452003 +
Psa Psa5g2203 Chr5 173488895 173491361 +
Psa Psa7g1833 Chr7 132536224 132538997 -
Tpr Tpr2g4697 Chr2 52326410 52331206 -
Tsu Tsu02g01225 Chr02 10366120 10368745 -
Vvi Vvi1g1336 Chr1 19574984 19576375 -
Adu Adu06g02413 Chr06 97849488 97855000 -
Arst Arst10g00924 Chr10 8449050 8450369 -
Lapu Lapu6g00100 Chr6 765342 768057 -
Lasa Lasa5g02638 Chr5 494228264 494230318 -
Mepo Mepo3g06243 Chr3 76590644 76593491 -
Pste Pste7g02376 Chr7 22513636 22515866 +
Pvu Pvu1g2675 Chr1 51474307 51478917 +
Pvu Pvu8g1546 Chr8 30785713 30790775 +
Rops Rops11g03747 Chr11 71163942 71166698 -
Rops Rops8g02267 Chr8 52198913 52203033 +
Vian Vian2g03163 Chr2 52119442 52121842 +
Vian Vian2g01368 Chr2 28127753 28133772 -
Vifa Vifa2g02479 Chr2 650370823 650373012 -
Vifa Vifa1g05080 Chr1 792629888 792632342 -
Vimu Vimu6g01540 Chr6 14435430 14437770 -
Vimu Vimu6g03848 Chr6 37357488 37365154 +
Viun Viun5g02212 Chr5 28413019 28416252 +
Vvi Vvi1g1337 Chr1 19576511 19577118 -
Vvi Vvi1g1338 Chr1 19582632 19584977 +
Adu Adu06g02412 Chr06 97835944 97840987 -
Psa Psa5g2209 Chr5 173816237 173818375 +
Pvu Pvu8g1547 Chr8 30849788 30853760 +
Rops Rops8g02266 Chr8 52189292 52194441 +
Vian Vian2g01367 Chr2 28096847 28105018 -
Vifa Vifa1g05082 Chr1 792760387 792764773 +
Vimu Vimu6g03847 Chr6 37341814 37345061 +
Viun Viun5g02211 Chr5 28379960 28382090 +
Vvi Vvi1g1339 Chr1 19586824 19600122 +
Adu Adu03g04519 Chr03 134557869 134561152 -
Arst Arst3g05977 Chr3 133321396 133324526 -
Bisa Bisa07g0377 Chr07 9888620 9893307 -
Lapu Lapu3g02591 Chr3 48255364 48259735 +
Lasa Lasa7g03920 Chr7 625617767 625620987 -
Lele Lele13g0316 Chr13 15018103 15027226 +
Lele Lele14g0262 Chr14 13885298 13891631 +
Lele Lele15g2154 Chr15 14471692 14477863 -
Lele Lele16g2174 Chr16 17122482 17125224 +
Lja Lja4g1065 Chr4 9233054 9236469 +
Mal Mal7g4167 Chr7 108470172 108473493 -
Mepo Mepo2g03847 Chr2 47677345 47681557 -
Mesa Mesa13g01294 Chr13 15407533 15409903 +
Mtr Mtr8g2784 Chr8 38498041 38502386 -
Phac Phac2g02748 Chr2 29046667 29051160 +
Phco Phco4g02044 Chr4 40593475 40596631 +
Pste Pste3g02712 Chr3 19932185 19937330 -
Pvu Pvu2g1807 Chr2 32629528 32633971 +
Spst Spst3g00132 Chr3 2340474 2344855 -
Tpr Tpr3g1323 Chr3 11714425 11718397 +
Trre Trre7g04505 Chr7 53030871 53033167 -
Tsu Tsu02g01220 Chr02 10326426 10328740 +
Vimu Vimu11g01833 Chr11 25560052 25563473 -
Vivi Vivi5g05603 Chr5 159119530 159123384 +
Vvi Vvi1g1340 Chr1 19601704 19607348 -
Dod Dod04g0592 Chr04 8460663 8463798 +
Glsi Glsi02g0110 Chr02 753885 756822 -
Adu Adu06g02412 Chr06 97835944 97840987 -
Pvu Pvu8g1547 Chr8 30849788 30853760 +
Rops Rops8g02266 Chr8 52189292 52194441 +
Vian Vian2g01367 Chr2 28096847 28105018 -
Vifa Vifa1g05082 Chr1 792760387 792764773 +
Vimu Vimu6g03847 Chr6 37341814 37345061 +
Viun Viun5g02211 Chr5 28379960 28382090 +
Adu Adu06g02415 Chr06 97989701 97992894 +
Arst Arst6g03102 Chr6 97186600 97189890 +
Pvu Pvu8g1545 Chr8 30562209 30565065 +
Rops Rops8g02265 Chr8 52158163 52160792 +
Seca Seca2g03044 Chr2 91044848 91047627 +
Vian Vian2g01360 Chr2 28008729 28012824 +
Vimu Vimu6g03854 Chr6 37425071 37429867 -
Viun Viun5g02197 Chr5 28119222 28122326 +
Glsi Glsi02g0110 Chr02 753885 756822 -
Bisa Bisa07g0377 Chr07 9888620 9893307 -
Lele Lele13g0316 Chr13 15018103 15027226 +
Lele Lele14g0262 Chr14 13885298 13891631 +
Lele Lele15g2154 Chr15 14471692 14477863 -
Lele Lele16g2174 Chr16 17122482 17125224 +