Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01360 ATGGCAACTACATATTTCCCACTGAGGTGGGAGAGCACTGGGGATCAGTGGTGGTATGCATCCCCAATAGATTGTGCTGCCGCAAATGGACATTATGACTTGGTTCGTGAGCTTCTTAAAATCGACAACAACCACCTCTTCAAGCTCACTTCATTGCGCAGAATTCGCCGCCTTGAAGTTGTGTGGGACGATGAAGAACAGTTCAGTGATGTTGCAAAATGCCGTTCACAGGTTGCACATAAGTTGCTTCTTGAGTGCGAGTCAAAGAGAGGGAAGAACAAGAACTCTCTCATCCGTGCTGGGTATGGAGGGTGGTTAATGTACACCGCTGCATCTGCTGGGGACTTGAGTTTTGTGCAACAACTTCTTGAGAGGAACCCTTTGTTGGTGTTCGGAGAGGGGGAGTATAATGTCACTGATATCTTTTATGCTGCTTCCAGGGGCAAGAATTGTGAGGTTTTTAGGCAGATTTTTGATTTTGCAGTTTCTCCAAGGTTTGTCACAGGCAAAGGTGGGGTTTTGGAGGAGCATGTTGGGGATATTCCTCCTGTTTACAAGTGGGAGATGAGCAATAGGGCTGTCCATGCCGCTGCTAGAGGGGGTAGTCTGGAGATTTTGGAGGAGTTTCTTGCTAATTGCTCTGATGTGTTGGGTTATAGAGATGCTCAGGGCTCTACTATATTGCATTCTGCTGCAGGCAGAGGGCAGGTTGAGGTGGTTAAGTATCTCACATCATCCTTTGACATAATAAACTCCACAGACCATCAGGGAAACTCTGCTTTGAATGTGGCTGCTTACAGGGGCCAATTAGCTACAGTTGAGGCTCTAGTTTCCGCATGTCCTGCATTGGTTTCTAAGAGAAACAATGGGGGAGACACTTTCCTCCATAAAGCTGTGTCTGGTTTTCAGTCTACCTCATTCAGAAGGTTGGACAGACAGGTTGAACTTTTAAGGCAGTTAGTATGTTGCAAAAAATTTCACATAGAGGAAGTCATCAATGTAAAGAACACTGATGGAAGAACTGCACTCCACATTGGCACAATGGGTAAAATCCACATCGATCTTGTTAAGCTCCTGATGACTGCTCCATCAGTCAATGTGAATTTGAGTGATTGTAATGGCATGACCCCACTTGATTACCTTAAGCAAAGTCCAAACACAGCAGCATCAAATATACTGATCAGGAAGTTGGTTGCAGCTGGGGGAATGTTCCACAATCAAGGCTATAATTCAAGAAAAGCCGCAGCTTCACACATGAAAATGCATAGTATTGGAGGCAGTCCTGGAACATCTTTTAGAATCTCTGACACTCAAATGTTCTTGTACACAGGAATTGAGAATGCATCAGATGCTAGTACGGATCAGGGAAGTGTAGGAATGAGTTCATCTTCATCAGACCATACTGCATATGACTCAGCAGCAGAGAACAGACCCTCAACAACAAGCATAAGGCCATCAGTGGCTGCCGGGTTGAAACGAGTCCTTCAGTGGCCACTGGTGAAGGATAAGAAAGGTGAGGGGATAAGGAAATCGATGGATGAGGGTTCAGTGGACTCATGCAAGAAATGGGACACCACAGATGAAATTCCAACTCCACTAAGACAAAAGTTCTTCAGGCATTCAGCACTTCAGAACAACAAAAGGAACCTATCTGTAAGGAGCTACCAGTCAAGTCCAAATGCTAAGAAGAGATTTGCTTCAGGACTGGTACATGTGAAGGTTTCAAGAAGATCAAGCTCTAGCTCATTTTCTATATCATCATTGTCATCCCCTAGATCCATAGATAAGCAAAAGGGTTTTTGTCTTGACAATGATGTTGCTGGACCGTCTTGCACAAGTCACCAAAATGATAAATCAACAATTTCAGGGAAGAGAGCTTCTGTCAGCAAAAAGCTAAGGGGCCATTATTTCTGTTTTTCAAAAGCCTCAGTAGACAGGGAGCAAGAAAGCCATTGTTACAAGGACCATGATGTTTTTGTGAGTGGCCTAATTGGATGA 1998 0.4439 MATTYFPLRWESTGDQWWYASPIDCAAANGHYDLVRELLKIDNNHLFKLTSLRRIRRLEVVWDDEEQFSDVAKCRSQVAHKLLLECESKRGKNKNSLIRAGYGGWLMYTAASAGDLSFVQQLLERNPLLVFGEGEYNVTDIFYAASRGKNCEVFRQIFDFAVSPRFVTGKGGVLEEHVGDIPPVYKWEMSNRAVHAAARGGSLEILEEFLANCSDVLGYRDAQGSTILHSAAGRGQVEVVKYLTSSFDIINSTDHQGNSALNVAAYRGQLATVEALVSACPALVSKRNNGGDTFLHKAVSGFQSTSFRRLDRQVELLRQLVCCKKFHIEEVINVKNTDGRTALHIGTMGKIHIDLVKLLMTAPSVNVNLSDCNGMTPLDYLKQSPNTAASNILIRKLVAAGGMFHNQGYNSRKAAASHMKMHSIGGSPGTSFRISDTQMFLYTGIENASDASTDQGSVGMSSSSSDHTAYDSAAENRPSTTSIRPSVAAGLKRVLQWPLVKDKKGEGIRKSMDEGSVDSCKKWDTTDEIPTPLRQKFFRHSALQNNKRNLSVRSYQSSPNAKKRFASGLVHVKVSRRSSSSSFSISSLSSPRSIDKQKGFCLDNDVAGPSCTSHQNDKSTISGKRASVSKKLRGHYFCFSKASVDREQESHCYKDHDVFVSGLIG 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01360 665 SMART ANK_2a 189 218 IPR002110 GO:0005515
Vian2g01360 665 SMART ANK_2a 136 166 IPR002110 GO:0005515
Vian2g01360 665 SMART ANK_2a 223 252 IPR002110 GO:0005515
Vian2g01360 665 SMART ANK_2a 290 330 IPR002110 GO:0005515
Vian2g01360 665 SMART ANK_2a 256 285 IPR002110 GO:0005515
Vian2g01360 665 SMART ANK_2a 18 47 IPR002110 GO:0005515
Vian2g01360 665 SMART ANK_2a 102 131 IPR002110 GO:0005515
Vian2g01360 665 SMART ANK_2a 338 369 IPR002110 GO:0005515
Vian2g01360 665 ProSiteProfiles Ankyrin repeat profile. 223 255 IPR002110 GO:0005515
Vian2g01360 665 SUPERFAMILY Ankyrin repeat 108 395 IPR036770 -
Vian2g01360 665 Gene3D - 247 418 IPR036770 -
Vian2g01360 665 ProSiteProfiles Ankyrin repeat region circular profile. 223 243 - -
Vian2g01360 665 Pfam Ankyrin repeats (3 copies) 143 248 IPR002110 GO:0005515
Vian2g01360 665 Gene3D - 13 174 IPR036770 -
Vian2g01360 665 MobiDBLite consensus disorder prediction 451 484 - -
Vian2g01360 665 Gene3D - 188 246 IPR036770 -
Vian2g01360 665 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 2 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01360 Vian-Chr2 28008729 28012824 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01360 195 420 Miscellaneous Gene Families AT5G60070 31.064 2.25e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01360 - - gmx:100781079 1162.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01360 2 28008729 28012824 Vian2g01360 2 28008729 28012824 ECH