Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01542 ATGAATTATTTGCATGTAGGATTCGGAAGGATTGGCCGTTTGGTGGCCAGGGTTGCCCTTCAAAGGAACGATGTTGAACTCGTTGCAATCAACGATCCTTTCATCACCACTGATTACATGACGTATATGTTCAAGTATGACACTGTTCATGGCCAATGGAAGCATTTTGATGTCAAGGTGAAGGACTCTAAGACTCTTCTCTTTGGTGAGAAGGCCGTGACAGTTTTTGGTATCAGGAACCCCGAAGACATTCCATGGGGCGAGGCTGGTGCTGACTATGTTGTTGAGTCAACCGGGGTATTCACTGACAAGGACAAGGCTGCTGCTCACTTGAAGGGTGGTGCCAAGAAGGTTGTGATTTCTGCCCCAAGCAAAGATGCACCCATGTTTGTTGTCGGTGTTAACGAGAAAGAATACAAACCAGAGCTTGACATTGTTTCCAACGCTAGCTGCACCACCAATTGCCTTGCTCCCCTCGCCAAGGTCATCAATGACCGATTCGGAATTGTTGAGGGTCTCATGACCACTGTTCACGCCATCACAGCGACTCAGAAGACTGTTGATGGTCCATCAAGCAAGGATTGGAGGGGTGGAAGAGCTGCTTCCTTCAATATTATTCCCAGCAGCACTGGAGCTGCCAAGGCTGTAGGAAAAGTTCTTCCAGCACTGAATGGCAAACTCACCGGAATGTCTTTCCGAGTCCCTACTGTTGATGTTTCAGTTGTTGACCTCACTGTCAGGATAGAGAAGGCAGCAACCTATGAGCAAATCAAAGCTGCTATCAAGGAGGAATCAGAGGGCAAATTGAAGGGTATTTTGGGTTACACTGAAGACGATGTTGTGTCTACTGATTTTGTTGGTGACAGCAGGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGTAAAGCTTGTTTCGTGGTATGACAACGAATGGGGTTACAGGTAA 963 0.4673 MNYLHVGFGRIGRLVARVALQRNDVELVAINDPFITTDYMTYMFKYDTVHGQWKHFDVKVKDSKTLLFGEKAVTVFGIRNPEDIPWGEAGADYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRIEKAATYEQIKAAIKEESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGISLNENFVKLVSWYDNEWGYR 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01542 320 PIRSF GAPDH 6 320 IPR020831 GO:0016620
Vimu6g01542 320 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 229 246 IPR020831 GO:0016620
Vimu6g01542 320 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 145 163 IPR020831 GO:0016620
Vimu6g01542 320 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 172 188 IPR020831 GO:0016620
Vimu6g01542 320 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 110 123 IPR020831 GO:0016620
Vimu6g01542 320 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 269 284 IPR020831 GO:0016620
Vimu6g01542 320 Gene3D Dihydrodipicolinate Reductase; domain 2 150 315 - -
Vimu6g01542 320 Gene3D - 7 319 - -
Vimu6g01542 320 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 7 319 IPR020831 GO:0016620
Vimu6g01542 320 FunFam Glyceraldehyde-3-phosphate dehydrogenase 150 315 - -
Vimu6g01542 320 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 150 313 - -
Vimu6g01542 320 SMART gp_dh_n_7 4 151 IPR020828 GO:0051287
Vimu6g01542 320 FunFam Glyceraldehyde-3-phosphate dehydrogenase 4 161 - -
Vimu6g01542 320 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 149 156 IPR020830 GO:0016620
Vimu6g01542 320 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 156 313 IPR020829 GO:0016620
Vimu6g01542 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 167 IPR036291 -
Vimu6g01542 320 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 7 104 IPR020828 GO:0051287
Vimu6g01542 320 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 7 319 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01542 Vimu-Chr6 14447237 14449096 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01542 K00134 - gmx:100782924 599.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01542 6 14447237 14449096 Vimu6g01542 6 14447237 14449096 ECH
Vimu6g01542 6 14447237 14449096 Vimu10g01965 10 28578674 28581048 ECH