Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02953 ATGTCTCCTTCACACTTGCCTCTTCGCTGGGAGAGCACCGGGGAACAGTGGTGGTACGCTTCTCCGATCGATTGCGCCGCCGCGAACGGCCACTACGATCTGGTTGTGGAGCTTCTCCACCTTGACGCCAATCTCCTCATTAAGCTCACTTCCCTCCGCAGAATTCGGCGCCTCGAAACAGTGTGGGACGACGAGGAACACTTCGAGGACGTCGCGAAATGTCGCTCGCAGGTTGCCAGGAACCTCATGCTGGAATGCGAGACGGGGAGAGGAACCAACTCTCTCATTCGCGCTGGCTACGGCGGGTGGCTCCTTTACACCGCCGCTTCGGCCGGTGACGTGGATTTCGTCCGGGAACTATTGGGGAGGAACCCTGCGCTTGTGTTCGGAGAAGGAGAGTATGGAGTCACTGATATACTGTATGCTGCTGCGAGGAGCAATAACTGTGAGGTGTTTGAGGTTGTGCTTCGTTCTGCTCTCTCGCCGGCGCAGATGGAGGAGATTTACCAGAGGGATATGATGAATAGGGCGGTTCATGCTGCTGCGAGAGGAGGGAACTGGGAGATGCTGAAACAGCTTGTAGGAGAGGGTTGTGGCGTTTTGGGGTTTAGAGATGCTCAAGGGTGCACTGTTTTGCATACTGCAGCTGCCAGAGGACAGGTTCAGGTGGTGAGAAATCTACTTGCATCATTTGATGTTGTAAACTTAACAGATGATCAAGGGAACACACCGTTACATGTAGCATCTTACGGGGGTCACTTACCTGTGGTGGCGATTCTGATTCTTGCATCCCCTTCATTAGCATTGTTAACCAATCACTATGGAGATACTTTTCTTCATATGGCAGTGGCTGGTTTCAGAAGTCCCGGTTTCCGTAGACTGGACAAACATGCTGAGCTCATGAAGCAATTGGTTTGTGGAAAGATTATGAACTTACAGGACATTATCAATGTCAAGAACAATGATGGAAGAACGGTTCTTCATGTATCCGTGATTGATAATGTTCAGTGCGAGCTAGTGGAAATGTTGATGTCTGTGCCATCAATTGATCTGAACATTTGTGATGCTGATGGGATGACCCCTTTGGATCTTCTAAAACAAAGACCACAATCAGCATCTTCTGATATTTTAATCAAGATGATAATTTCCTCTGGAGGGGTCTCTAATGGTCGAAATGCTATAGCAGGAAATGCCCTTTGCACTCATCACAAAGCTCATGTCATCGGAGGCAGTCCTGGCACTTCATTTAGAATACCAGATGCAGAGATATTCTTGTACACTGGCAATGAGAATTCATCAGATGCCAATTATGATGAAGCAAGTGTGGAATCATATTCCTCCTCAAACGAACCGAGCAATTCTGAATCCGAAAATTCCCCAGATAACAAGAAGTCTAATTATTCTGCCAATTCTGCTGTAAAGCGTTCAAAGTTTCGTCTGGGGTGGCCTAAAAGAAAAGAGACAAAAGCAGCTGCATCAGAAGTAGAAGATGATGATTCTCTTGATCCTTTTAGTTCAAGTAGAAACTTGGAAGATTTTTCAATTCCATTGCGGCAAAGATACTCACAACCATGCTCCCTTCCAAACAACAAAAGAACACAATCTATTAGAACTTCTCTTCCAAATCCATTCTCCAAAGTTAAATTCAGTGCTGGCCTGATGCAAGGTGTAATGCAGGTAAAGCCACATTTTGCTCATTCAACTCCGAGTCCTTTCCAAGAATTATCTGTGACTTCTCTTTCTTCCATCAAGAAACAAAAGGGTACTTTGTGCTCTAATCCACCATCAGATGACGAGGAACTTCTATTGAACTACAAACATTGTTCCTTCAATAAAAAATTGATGAATGGGTATTTTTCTTTTGGGTCACAAGGCCTGGCTGTTGAAAATTCCAATAGCTGTGCAAAGTCAAACAGGAGTTACAAGCATTTGAGTTCCACAGTTGCCTAA 1950 0.4569 MSPSHLPLRWESTGEQWWYASPIDCAAANGHYDLVVELLHLDANLLIKLTSLRRIRRLETVWDDEEHFEDVAKCRSQVARNLMLECETGRGTNSLIRAGYGGWLLYTAASAGDVDFVRELLGRNPALVFGEGEYGVTDILYAAARSNNCEVFEVVLRSALSPAQMEEIYQRDMMNRAVHAAARGGNWEMLKQLVGEGCGVLGFRDAQGCTVLHTAAARGQVQVVRNLLASFDVVNLTDDQGNTPLHVASYGGHLPVVAILILASPSLALLTNHYGDTFLHMAVAGFRSPGFRRLDKHAELMKQLVCGKIMNLQDIINVKNNDGRTVLHVSVIDNVQCELVEMLMSVPSIDLNICDADGMTPLDLLKQRPQSASSDILIKMIISSGGVSNGRNAIAGNALCTHHKAHVIGGSPGTSFRIPDAEIFLYTGNENSSDANYDEASVESYSSSNEPSNSESENSPDNKKSNYSANSAVKRSKFRLGWPKRKETKAAASEVEDDDSLDPFSSSRNLEDFSIPLRQRYSQPCSLPNNKRTQSIRTSLPNPFSKVKFSAGLMQGVMQVKPHFAHSTPSPFQELSVTSLSSIKKQKGTLCSNPPSDDEELLLNYKHCSFNKKLMNGYFSFGSQGLAVENSNSCAKSNRSYKHLSSTVA 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02953 649 ProSiteProfiles Ankyrin repeat region circular profile. 240 261 - -
Phco2g02953 649 Gene3D - 11 395 IPR036770 -
Phco2g02953 649 ProSiteProfiles Ankyrin repeat region circular profile. 207 228 - -
Phco2g02953 649 Pfam Ankyrin repeats (3 copies) 179 261 IPR002110 GO:0005515
Phco2g02953 649 ProSiteProfiles Ankyrin repeat profile. 207 239 IPR002110 GO:0005515
Phco2g02953 649 MobiDBLite consensus disorder prediction 435 470 - -
Phco2g02953 649 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 7 473 - -
Phco2g02953 649 SMART ANK_2a 207 236 IPR002110 GO:0005515
Phco2g02953 649 SMART ANK_2a 18 47 IPR002110 GO:0005515
Phco2g02953 649 SMART ANK_2a 274 314 IPR002110 GO:0005515
Phco2g02953 649 SMART ANK_2a 134 164 IPR002110 GO:0005515
Phco2g02953 649 SMART ANK_2a 240 269 IPR002110 GO:0005515
Phco2g02953 649 SMART ANK_2a 173 203 IPR002110 GO:0005515
Phco2g02953 649 SMART ANK_2a 322 353 IPR002110 GO:0005515
Phco2g02953 649 SMART ANK_2a 100 129 IPR002110 GO:0005515
Phco2g02953 649 ProSiteProfiles Ankyrin repeat profile. 240 272 IPR002110 GO:0005515
Phco2g02953 649 MobiDBLite consensus disorder prediction 489 509 - -
Phco2g02953 649 SUPERFAMILY Ankyrin repeat 104 378 IPR036770 -
Phco2g02953 649 MobiDBLite consensus disorder prediction 489 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02953 Phco-Chr2 58436763 58439368 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02953 2 58436763 58439368 Phco2g02953 2 58436763 58439368 ECH
Phco2g02953 2 58436763 58439368 Phco4g02054 4 40709563 40712391 PCT