Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1313 ATGACCCGCAAGCTGAGCCCAAATGCCAATCCAGCGCGTCAACATCAGGCAAGAAGATCAAGATCGGAATCAATGGTAATTGATGTTTCTTTTGCGATTGGCCGATTGGTGGCCAGAGTGGCTCTTCAGAGAGACGACGTTGAGCTCGTTTCAGTCAACGATCCTTTCATCAGCACTGAATATATGACATACATGTTTAAGTATGATACTGTTCATGGTACATGGAAGCACTTTGATGTCAAGGTGAAGGACTCTAAGACCCTTCTCTTTGGGGAGAAGCCTGTCACTGTTTTCGGATTTAGGAACCCTGAGGATATCCCATGGGCTGAGACCGGTGCTGAATATGTTGTTGAGTCAACTGGTGTCTTCACAGACAAGGAAAAGGCTGCTGCCCACTTGAAGGGTGGGGCTAAGAAGGTTGTCATTTCTGGCCCAAGCAAAGATGCACCCATGTTTGTTGTCGGAGTTAACGAGAAGGAATACAAGCCAGAGCTTGACATTGTTTCCAATGCTAGCTGCACTACCAATTGCCTTGCTCCTCTCGCCAAGGTTATCAACGATAGGTTTGGAATTGCAGAGGGTCTCATGAGCGCTGTCCATGCCATCACTGCCACTCAGAAGACTGTTGATGGTCCTTCAAACAAGGACTGGAGGGGTGGAAGAGCTGCATCCTTCAACATAATTCCCAGCAGCACCGGAGCTGCCAAGGCTGTTGGAAAAGTTCTGCCCCAGCTGAATGGCAAATTGACTGGAATGTCTTTCCGAGTCCCTACCGTTGATGTCTCAGTTGTTGACCTTACTGTCAGGCTAGAGAAAAAGGCAACCTATGAGCAGATCAAAGCTGCCATTAAAGAGGAATCAGAGGGTAGCCTGAAGGGAATCTTGGGTTACACTGAAGATGATGTTGTGTCTACCGACTTCCTTGGTGACAGCAGGTCAAGCATATTTGATGCCAAGGCTGGAATTGCTTTGAATGAGAACTTTGTTAAGCTCGTTGCTTGGTATGACAATGAATGGGGTTACAGTACCCGAGTGATTGATTTGATTGCCTACATTGCATCTGTTGCTTAA 1071 0.4706 MTRKLSPNANPARQHQARRSRSESMVIDVSFAIGRLVARVALQRDDVELVSVNDPFISTEYMTYMFKYDTVHGTWKHFDVKVKDSKTLLFGEKPVTVFGFRNPEDIPWAETGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISGPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVINDRFGIAEGLMSAVHAITATQKTVDGPSNKDWRGGRAASFNIIPSSTGAAKAVGKVLPQLNGKLTGMSFRVPTVDVSVVDLTVRLEKKATYEQIKAAIKEESEGSLKGILGYTEDDVVSTDFLGDSRSSIFDAKAGIALNENFVKLVAWYDNEWGYSTRVIDLIAYIASVA 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1313 356 FunFam Glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic 338 351 - -
Lele21g1313 356 Gene3D - 33 351 - -
Lele21g1313 356 PIRSF GAPDH 32 356 IPR020831 GO:0016620
Lele21g1313 356 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 194 210 IPR020831 GO:0016620
Lele21g1313 356 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 132 145 IPR020831 GO:0016620
Lele21g1313 356 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 167 185 IPR020831 GO:0016620
Lele21g1313 356 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 251 268 IPR020831 GO:0016620
Lele21g1313 356 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 291 306 IPR020831 GO:0016620
Lele21g1313 356 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 26 353 IPR020831 GO:0016620
Lele21g1313 356 MobiDBLite consensus disorder prediction 1 15 - -
Lele21g1313 356 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 33 189 IPR036291 -
Lele21g1313 356 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 33 126 IPR020828 GO:0051287
Lele21g1313 356 FunFam Glyceraldehyde-3-phosphate dehydrogenase 172 337 - -
Lele21g1313 356 MobiDBLite consensus disorder prediction 1 21 - -
Lele21g1313 356 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 178 335 IPR020829 GO:0016620
Lele21g1313 356 Gene3D Dihydrodipicolinate Reductase; domain 2 172 337 - -
Lele21g1313 356 FunFam Glyceraldehyde-3-phosphate dehydrogenase 25 183 - -
Lele21g1313 356 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 33 347 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Lele21g1313 356 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 171 178 IPR020830 GO:0016620
Lele21g1313 356 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 172 335 - -
Lele21g1313 356 SMART gp_dh_n_7 29 173 IPR020828 GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1313 Lele-ChrLele21 21275219 21277845 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1313 21 21275219 21277845 Lele21g1313 21 21275219 21277845 ECH
Lele21g1313 21 21275219 21277845 Lele23g0718 23 5753042 5755397 hybridization
Lele21g1313 21 21275219 21277845 Lele24g1225 24 16220300 16222684 hybridization