Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02952 ATGGCATCAGACAAGAAGATTAGGATCGGTATCAACGGATTCGGAAGGATTGGCCGTTTGGTGGCCAGGGTTGCTCTTCAAAGGAACGATGTTGAACTCGTTGCAATCAACGATCCTTTCATCACCACTGACTACATGACATATATGTTCAAGTATGATACTGTTCATGGCCAATGGAAGCATTTTGATGTCAAGGTGAAGGACTCCAAGACCCTTCTCTTTGGTGAGAAGGCTGTGGCAGTTTTTGGTACCAGGACCCCCGAGGACATTCCATGGGGTGAGGCTGGTGCTGATTATGTTGTTGAGTCAACTGGTGTATTCACTGACAAGGACAAGGCTGCTGCTCACTTGAAGGGTGGTGCCAAGAAGGTTGTCATTTCTGCCCCAAGCAAAGATGCACCCATGTTTGTTGTTGGTGTTAACGAGAAAGAATACAAACCAGAACTTGACATTGTTTCCAATGCTAGCTGCACTACCAATTGCCTTGCTCCCCTCGCCAAGGTCATCAATGACCGATTTGGAATTGTTGAGGGTCTCATGACCACTGTTCACGCCATCACAGCTACCCAGAAGACTGTTGATGGTCCATCAAGCAAGGATTGGAGGGGTGGAAGAGCTGCTTCCTTCAATATTATTCCCAGCAGCACTGGAGCTGCCAAGGCTGTAGGAAAAGTTCTTCCAGCACTGAATGGAAAATTGACCGGAATGTCCTTCCGAGTCCCCACTGTTGATGTTTCAGTTGTTGACCTCACTGTTAGGATAGAGAAGTCAGCAACCTATGAGCAAATCAAGGCTGCAATCAAGGAGGAATCAGAGGGCAAATTGAAGGGTATTTTGGGATACACAGAAGAAGATGTTGTGTCTACTGATTTTGTTGGGGATAGCAGGTCTAGCATATTTGACGCCAAGGCCGGAATTTCTTTGAATGAAAACTTTGTGAAGCTTGTTTCGTGGTATGACAACGAATGGGGTTACAGTACCCGTGTGATTGACTTGATTGTCCACATTGCATCTGTGCATAAGAATTGA 1029 0.4606 MASDKKIRIGINGFGRIGRLVARVALQRNDVELVAINDPFITTDYMTYMFKYDTVHGQWKHFDVKVKDSKTLLFGEKAVAVFGTRTPEDIPWGEAGADYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRIEKSATYEQIKAAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGISLNENFVKLVSWYDNEWGYSTRVIDLIVHIASVHKN 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02952 342 SMART gp_dh_n_7 7 157 IPR020828 GO:0051287
Phco2g02952 342 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 155 162 IPR020830 GO:0016620
Phco2g02952 342 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 7 110 IPR020828 GO:0051287
Phco2g02952 342 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 116 129 IPR020831 GO:0016620
Phco2g02952 342 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 275 290 IPR020831 GO:0016620
Phco2g02952 342 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 235 252 IPR020831 GO:0016620
Phco2g02952 342 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 151 169 IPR020831 GO:0016620
Phco2g02952 342 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 178 194 IPR020831 GO:0016620
Phco2g02952 342 PIRSF GAPDH 5 341 IPR020831 GO:0016620
Phco2g02952 342 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 6 338 IPR020831 GO:0016620
Phco2g02952 342 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 156 319 - -
Phco2g02952 342 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 173 IPR036291 -
Phco2g02952 342 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 8 331 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Phco2g02952 342 FunFam Glyceraldehyde-3-phosphate dehydrogenase 156 321 - -
Phco2g02952 342 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 162 319 IPR020829 GO:0016620
Phco2g02952 342 FunFam Glyceraldehyde-3-phosphate dehydrogenase 7 167 - -
Phco2g02952 342 Gene3D Dihydrodipicolinate Reductase; domain 2 156 321 - -
Phco2g02952 342 Gene3D - 7 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02952 Phco-Chr2 58428657 58430904 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02952 2 58428657 58430904 Phco2g02952 2 58428657 58430904 ECH
Phco2g02952 2 58428657 58430904 Phco7g01997 7 34040468 34042953 ECH