Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03429 ATGTCTCCTTCACACTTGCCTCTGCGTTGGGAGAGCACCGGAGAGCAGTGGTGGTACGCTTCTCCGATCGATTGCGCCGCCGCGAACGGCCACTACGATCTGGTGGTGGAGCTTCTCCACCTCGACGCCAACCTCCTCATTAAGCTCACTTCCCTCCGCAGAATTCGGCGCCTCGAAACAGTGTGGGACGACGAGGAACACTTCGAGGACGTCGCGAAATGTCGCTCGCAGGTTGCGAGGAACCTCATGCTGGAATGCGAGACGGGAAGAGGAATCAACTCCCTCATTCGCGCCGGCTACGGCGGGTGGCTCCTCTACACCGCCGCCTCGGCCGGTGACGTGGATTTCGTCCGGGAACTGTTGGGGAGGAACCCTGCGCTTGTGTTGGGAGAAGGAGAGTATGGAGTCACTGATATACTGTATGCTGCTGCGAGGAGCAATGACTGTGAGGTGTTTGAGGTTGTGCTTCGTTCTGCTCTCTCGCCGCCGGCGCAGATGGAAGAGGTTTTCGAGAAGGATATGATGAATAGAGCGGTTCATGCTGCTGCGAGAGGAGGGAACTGGGAGATGCTGAAACAGCTTGTGAAAGAGGATTGTGGCGTTTTGGGGTTTAGAGATGCTCAAGGGTGCACCGTTTTGCATACTGCAGCTGCCAGAGGACAGGTTCAGGTGGTGAGAAATCTACTTGCAACATTCGATGTTGTAAACTTAACAGATGATCAAGGAAACACAGCGTTACATGTAGCATCTTACGGGGGTCACTTACCCGTGGTGGAGATTCTGATTCGTGCATCCCCTTCATTAGCATTGGTAACCAACCACTATGGAGATACTTTTCTTCATATGGCAGTGGCTGGTTTCAGAAGTCCCGGTTTCCGAAGATTGGACAAACATGCTGAGCTCATGAAGCAATTGGTTTGTGGAAAGATCGTGAATTTACAGAACATCATCAATGTCAAGAACAATGATGGAAGAACGGTTCTTCATGTAGCAGTGATTGATAACGTTCAGTGCGAGCTAGTGGAACTGTTGATGTCTGTGCCATCAATTGATCTTAACATTTGTGATGCTGATGGAATGACCCCTTTGGATCTTCTGAAACAAAGACCAAAATCAGCATCTTCTGATATCTTAATCAAGATGATAGTTTCCTCTGGAGGGGTCTCTAATGGTAAAAATCCTATAGCAGGAAATGCACTTTGCATTCATCACAAAGCTCATGTCATTGGAGGGAGTCCTGGCACTTCGTTTAGAATACCAGATGCTGAGATTTTCTTGTACACTGGCATTGAGAATTCATCAGATTGCAATTATGATCAAGCAAGTGTGGAATCATATTCCTGCTCAAACGAACCAAGCAATTCTGACTCCGAAAATTCCCCACACACCAAGAAGTATGATAATTCTGCGAATCGTGCTGTGAGGCGTTCTTCAAAGTTTCGTCTCAGGTGGCCTAAAAGAAAGGAGACAAAAACAACTGCATCAGAATTAGAAGATGACGATTCTCTTGATCCTTTTAGTTCAAGTAGAAACTTGGAAGATTTTGCAATTCCATTGCGGCAAAGATACTCACAACAACCATGCTCCCTTCCAAACAACAAAAGAACAACTTCTCTTCCAAGTTCATCCTCCAAAGTGAAATTCAGTGCTGGTCTGATGCAAGGTGTGATTCAAGTAAAGCCACATTTTTCTCATACAACTCCAAGTCCTTTCCAAGAATTATCTGTGGCTTCTCTTTCTTCCATCAAGAAACAAAAGGGTACTGATATAAAGGGACCCTCTTGTTCTAATCCACCATCGGAGGACACAGCCCTTCTGTTGGACTACAAACATTGTTCCCTCAATAAAAACTGA 1854 0.4687 MSPSHLPLRWESTGEQWWYASPIDCAAANGHYDLVVELLHLDANLLIKLTSLRRIRRLETVWDDEEHFEDVAKCRSQVARNLMLECETGRGINSLIRAGYGGWLLYTAASAGDVDFVRELLGRNPALVLGEGEYGVTDILYAAARSNDCEVFEVVLRSALSPPAQMEEVFEKDMMNRAVHAAARGGNWEMLKQLVKEDCGVLGFRDAQGCTVLHTAAARGQVQVVRNLLATFDVVNLTDDQGNTALHVASYGGHLPVVEILIRASPSLALVTNHYGDTFLHMAVAGFRSPGFRRLDKHAELMKQLVCGKIVNLQNIINVKNNDGRTVLHVAVIDNVQCELVELLMSVPSIDLNICDADGMTPLDLLKQRPKSASSDILIKMIVSSGGVSNGKNPIAGNALCIHHKAHVIGGSPGTSFRIPDAEIFLYTGIENSSDCNYDQASVESYSCSNEPSNSDSENSPHTKKYDNSANRAVRRSSKFRLRWPKRKETKTTASELEDDDSLDPFSSSRNLEDFAIPLRQRYSQQPCSLPNNKRTTSLPSSSSKVKFSAGLMQGVIQVKPHFSHTTPSPFQELSVASLSSIKKQKGTDIKGPSCSNPPSEDTALLLDYKHCSLNKN 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03429 617 ProSiteProfiles Ankyrin repeat region circular profile. 208 229 - -
Viun1g03429 617 ProSiteProfiles Ankyrin repeat profile. 208 240 IPR002110 GO:0005515
Viun1g03429 617 ProSiteProfiles Ankyrin repeat region circular profile. 241 263 - -
Viun1g03429 617 Gene3D - 12 394 IPR036770 -
Viun1g03429 617 Pfam Ankyrin repeats (3 copies) 180 263 IPR002110 GO:0005515
Viun1g03429 617 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 7 464 - -
Viun1g03429 617 ProSiteProfiles Ankyrin repeat profile. 241 273 IPR002110 GO:0005515
Viun1g03429 617 MobiDBLite consensus disorder prediction 447 508 - -
Viun1g03429 617 MobiDBLite consensus disorder prediction 458 474 - -
Viun1g03429 617 MobiDBLite consensus disorder prediction 523 543 - -
Viun1g03429 617 SUPERFAMILY Ankyrin repeat 22 379 IPR036770 -
Viun1g03429 617 MobiDBLite consensus disorder prediction 487 507 - -
Viun1g03429 617 SMART ANK_2a 208 237 IPR002110 GO:0005515
Viun1g03429 617 SMART ANK_2a 18 47 IPR002110 GO:0005515
Viun1g03429 617 SMART ANK_2a 134 164 IPR002110 GO:0005515
Viun1g03429 617 SMART ANK_2a 241 270 IPR002110 GO:0005515
Viun1g03429 617 SMART ANK_2a 174 204 IPR002110 GO:0005515
Viun1g03429 617 SMART ANK_2a 275 315 IPR002110 GO:0005515
Viun1g03429 617 SMART ANK_2a 323 354 IPR002110 GO:0005515
Viun1g03429 617 SMART ANK_2a 100 129 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03429 Viun-Chr1 41339698 41342604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03429 105 365 Miscellaneous Gene Families AT2G31820 32.075 2.03e-20 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03429 - - vun:114165357 1212.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03429 1 41339698 41342604 Viun1g03429 1 41339698 41342604 ECH
Viun1g03429 1 41339698 41342604 Viun3g02305 3 20399101 20402155 PCT