Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01918 ATGTCTCCTTCACACTTGCCTCTTCGCTGGGAGAGCACCGGAGAACAGTGGTGGTACGCTTCTCCGATCGATTGCGCAGCCGCGAACGGCCACTACGATCTGGTGGTGGAGCTTCTCCACCTCGACACCAACCTCCTCATTAAACTCACTTCCCTCCGCAGAATTCGGCGCCTCGAGACAGTGTGGGACGACGAGGAACACTTCGAGGACATCGCGAAATGTCGCTCGCAGGTTGCCTGGAACCTCATGCTGGAATGCGAGACGGGAAGAGGAACCAACTCTCTCGTTCGGGCCGGCTACGGCGGGTGGCTTCTCTACACCGCCGCCTCCGCCGGTGACGTGGATTTCGTCCGGGAACTGTTGGGGAGGAACCCTGCGCTTGTGTTCGGAGAAGGAGAGTATGGGGTCACTGATATACTGTATGCTGCTGCGAGGAGCAATAACTGTGAGGTGTTTGAGGTTGTGCTTCGTTCTGCTCTCTCACCGGCGCAAATGGAAGAGGTTTACGAGAGGGATATGATGAATAGGGCGGTTCATGCCGCTGCGAGAGGAGGGAACTGGGAGATGCTGAAACAGCTTTTGGTAGAGGGTTGTGGCGTTTTGGGGTTTAGAGATGCTCAAGGGTGCACTGTTTTGCATACTGCAGCTGCCAGAGGACAGGTTCAGGTGGTGAGAAATCTACTTGCATCATTTGATGTTGTAAACTTAACAGATGATCAAGGGAACACAGCATTACATGTAGCATCTTACGGGGGTCACTTAGCTGTGGTGGAGATTCTGATTCTTGCATCCCCCTCACTAGCATTGTTAACCAACCACTATGGAGATACTTTTCTTCATATGGCAGTGGCTGGTTTCAGAAGTCCCGGTTTCCGTAGACTGGACAAACATGCCGAGCTAATGAAACAATTGGTAAGGGGAAAGATTGTGAACTTACAGGACATCATCAATGTTAAGAACAACGATGGAAGAACGGCTCTTCATGTATCCGTGATTGATAATATTCAATGTGAACTAGTGGAATTGTTGATGTCTGTGCCATCAATTGATCTGAACATTTGTGATGCTGATGGGATGACCCCTTTGGATCTTCTAAAACAAAGACCACAGTCAGCATCTTCTGATATTTTAATCAAGATGATAATTTCCGCTGGAGGGGTCTCGAATCGTCAAAATGCTATAGCAGGAAATGCCCTTTGCACTCATCACAAAGCTCATGTCATTGGAGGCAGTCCTGGTACTTCATTTAGAATACCAGATGCAGAGATATTCTTGTACACTGGCATTGAGAATTCATCAGATGCCAATTATGATCAAGCAAGCGTGGAATCACATTCCTGGTCAAATGAACTAAGCAATTCTGACTCAGAAAATTCCCCAGGTAATAAGAAGGGTAATAATTCTGCCAATTCTTTTAGAAGGCGTTCAAAATTTCGTCTCCTGTGGCCTAAAAAAAGAGAGAGAAAAGCAACTGCATCAGAATTAGAAGATGATTCTCTTGATCCTTTGCGTTCAAGTAGAAACTTGGAAGAGTTTCCTATTCCATTGCGGCAAAGATACTCGCAACCATGCTCCCTTCCAAACAACAAAAGAACACAATCTATGAGGGCTTCTCTTCCAAGTTCATCCTCCAGAGTGAAATTCAGTGCAGGTCTGATGCAAGGTGTAATTCAGGTAAAGCCACGTTCTGCTCATTCAACTCCAAGTCCTTTCCAAGAATTATCTGTGACTTCTCTTTCTTCCATCAAGAAACAAAAGGGTACTGATATAAAGGGACCCTTTTGCTCTAACGGACCATTAGATGAAGACACACTTCTATTAAATTACAAACAGTGCTCCTTCAATAAAAAAATGATGAATGGGTATTTTTCTTTTGGAGCACAAGGCCTGGCTGTTGAAAATTCCAATAGCTGTGCGAAGTCAAACAGAAGTTACAAGTGTTTGAGTTCCGTAGTTGCCTAA 1962 0.4592 MSPSHLPLRWESTGEQWWYASPIDCAAANGHYDLVVELLHLDTNLLIKLTSLRRIRRLETVWDDEEHFEDIAKCRSQVAWNLMLECETGRGTNSLVRAGYGGWLLYTAASAGDVDFVRELLGRNPALVFGEGEYGVTDILYAAARSNNCEVFEVVLRSALSPAQMEEVYERDMMNRAVHAAARGGNWEMLKQLLVEGCGVLGFRDAQGCTVLHTAAARGQVQVVRNLLASFDVVNLTDDQGNTALHVASYGGHLAVVEILILASPSLALLTNHYGDTFLHMAVAGFRSPGFRRLDKHAELMKQLVRGKIVNLQDIINVKNNDGRTALHVSVIDNIQCELVELLMSVPSIDLNICDADGMTPLDLLKQRPQSASSDILIKMIISAGGVSNRQNAIAGNALCTHHKAHVIGGSPGTSFRIPDAEIFLYTGIENSSDANYDQASVESHSWSNELSNSDSENSPGNKKGNNSANSFRRRSKFRLLWPKKRERKATASELEDDSLDPLRSSRNLEEFPIPLRQRYSQPCSLPNNKRTQSMRASLPSSSSRVKFSAGLMQGVIQVKPRSAHSTPSPFQELSVTSLSSIKKQKGTDIKGPFCSNGPLDEDTLLLNYKQCSFNKKMMNGYFSFGAQGLAVENSNSCAKSNRSYKCLSSVVA 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01918 653 Gene3D - 11 397 IPR036770 -
Spst1g01918 653 MobiDBLite consensus disorder prediction 521 543 - -
Spst1g01918 653 ProSiteProfiles Ankyrin repeat region circular profile. 207 228 - -
Spst1g01918 653 ProSiteProfiles Ankyrin repeat profile. 240 272 IPR002110 GO:0005515
Spst1g01918 653 Pfam Ankyrin repeats (3 copies) 179 261 IPR002110 GO:0005515
Spst1g01918 653 ProSiteProfiles Ankyrin repeat profile. 207 239 IPR002110 GO:0005515
Spst1g01918 653 SMART ANK_2a 207 236 IPR002110 GO:0005515
Spst1g01918 653 SMART ANK_2a 173 203 IPR002110 GO:0005515
Spst1g01918 653 SMART ANK_2a 322 353 IPR002110 GO:0005515
Spst1g01918 653 SMART ANK_2a 240 269 IPR002110 GO:0005515
Spst1g01918 653 SMART ANK_2a 274 314 IPR002110 GO:0005515
Spst1g01918 653 SMART ANK_2a 134 164 IPR002110 GO:0005515
Spst1g01918 653 SMART ANK_2a 18 47 IPR002110 GO:0005515
Spst1g01918 653 SMART ANK_2a 357 390 IPR002110 GO:0005515
Spst1g01918 653 SMART ANK_2a 100 129 IPR002110 GO:0005515
Spst1g01918 653 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 7 461 - -
Spst1g01918 653 MobiDBLite consensus disorder prediction 440 471 - -
Spst1g01918 653 SUPERFAMILY Ankyrin repeat 104 378 IPR036770 -
Spst1g01918 653 ProSiteProfiles Ankyrin repeat region circular profile. 240 261 - -
Spst1g01918 653 MobiDBLite consensus disorder prediction 520 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01918 Spst-Chr1 27420994 27423553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01918 105 364 Miscellaneous Gene Families AT2G31820 30.566 1.35e-20 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01918 - - gmx:100796359 1092.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01918 1 27420994 27423553 Spst1g01918 1 27420994 27423553 ECH
Spst1g01918 1 27420994 27423553 Spst3g00123 3 2191420 2194925 PCT