Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1338 ATGGAGCATAATCAGCAGGAGAAGGATGCTAGAGAGAAGGCCATTGATGATTGGCTTCCAATCACATCGTCCAGGAATGCAAAATGGTGGTACTCGGCATTCCACAATGTGACTGCCATGGTTGGGGCTGGTGTCCTCAGCCTCCCTTATGCTATGGCAGAGCTTGGATGGGGCCCTGGGGTGGTTGTTCTTATTCTTTCATGGATCGTCACCTTGTACACTCTATGGCAAATGGTTGAGATGCATGAAATGGTTCCTGGGAAGCGGTTTGATAGATACCATGAACTAGGACAGTACGCCTTTGGTGAAAAGCTTGGCCTCTGGATTGTGGTCCCTCAACAGGTGATTGTAGAAGTGGGTGTTGACATTGCCTACATGATCACCGGAGGCAAATCTTTGCAGAAGTTCCATAACACAGTTTGTCCCAGCTGCAAGCCAATCAAGACCACCTACTTCATCATGATTTTTGCCTCTTGTCACTTTGTTCTCTCCCATTTGCCCAATTTCAACTCCATTGCTGGTGTCTCATTTGCTGCTGCAACCATGTCCTTAACTTACTCAACTATTGCCTGGACAGCTTCGGTTCATAAGGGTGTCCAACCAGATGTGCAATATACATACACAGCTTCGACCACAACTGGAAGAGTCTTCAACTTCTTTAGCGCCTTGGGTGACGTAGCATTTGCCTATGCTGGTCACAATGTGGTGTTGGAGATCCAAGCAACAATTCCCTCCACTCCTGAGAAGCCTTCCAAGAGACCCATGTGGAAAGGAGTGATTTTCGCTTATATTGTCGTTGCCTTGTGCTACTTCCCTGTCGCTCTGATTGGATACTGGATGTTTGGGAACAGCGTTGCTGACAATATCCTTATCACACTGGAGAAACCCCGCTGGCTTATAGCAGCAGCCAACCTGTTTGTTGTCATCCATGTTATTGGAAGCTACCAGATATATGCGATGCCAGTGTTTGACATGTTGGAAACATTGCTGGTGAAGAAACTGAAATTCACACCATCTTTCAGGCTTCGTCTTATTACCCGCACTCTATACGTCGCTTTTACAATGTTCATAGGCATGTTGATCCCTTTCTTTGGTAGCCTCCTTGGGTTCTTGGGAGGATTGGTGTTTGCACCAACGACCTACTTTCTCCCCTGTATCATGTGGCTTGCAATTTATAAACCCAAAAGGTTTAGCCTATCGTGGATTACGAATTGGATCTGTATAATTCTGGGAGTGATATTGATGATTTTAGCTCCCATTGGTGCCCTGAGGCAGATCATCCTCCAAGCCAAGACCTTCGAAGTGTTCTCATGA 1314 0.4635 MEHNQQEKDAREKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAELGWGPGVVVLILSWIVTLYTLWQMVEMHEMVPGKRFDRYHELGQYAFGEKLGLWIVVPQQVIVEVGVDIAYMITGGKSLQKFHNTVCPSCKPIKTTYFIMIFASCHFVLSHLPNFNSIAGVSFAAATMSLTYSTIAWTASVHKGVQPDVQYTYTASTTTGRVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKRPMWKGVIFAYIVVALCYFPVALIGYWMFGNSVADNILITLEKPRWLIAAANLFVVIHVIGSYQIYAMPVFDMLETLLVKKLKFTPSFRLRLITRTLYVAFTMFIGMLIPFFGSLLGFLGGLVFAPTTYFLPCIMWLAIYKPKRFSLSWITNWICIILGVILMILAPIGALRQIILQAKTFEVFS* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1338 437 Pfam Transmembrane amino acid transporter protein 26 421 IPR013057 -
Vvi1g1338 437 Gene3D Amino acid/polyamine transporter I 22 432 - -
Vvi1g1338 437 FunFam Lysine histidine transporter 1 22 432 - -
Vvi1g1338 437 PANTHER OS05G0424000 PROTEIN-RELATED 23 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1338 Vvi-Chr1 19582632 19584977 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1338 10 437 Organic Solute Cotransporters AT1G24400 77.804 0.0 685
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1338 - - vvi:100247632 875.93